| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126175901
Identifier: 126175901
GI number: 126175901
Start: 4330304
End: 4332949
Strand: Direct
Name: 126175901
Synonym: Sbal_3707
Alternate gene names: NA
Gene position: 4330304-4332949 (Clockwise)
Preceding gene: 126175898
Following gene: 126175904
Centisome position: 84.45
GC content: 48.72
Gene sequence:
>2646_bases ATGGCATCAGCAGAACACGATTATCAGCTTTTTATTCAATGGCTTCATCAACCTGACAGAGAGACGCCAGAGGACGTTCG CCGCTTTGCTCGGCTCGTACTGGACAACTTTGAAAGCGTCTGTGCAACTACCCGTCATCGCAGTCAACGGTCAGTACATT TGGTTGACCTAGCACGTCAACGGTTCACCACGACAGATCCAGATCAACCTCAGATGGACGCCATTGCGGTAGGGGCTGGA TGGAGCTGGCAGACATTGTGCCATATCTCTCTTGGACCATTCAGGGGCTTTAGGAATGTTGAAGACTTTGATCTCTCACG ACGCATAGTATTGTTTTATGGCCCCAATGGCAGCGGCAAGACAAGTCTTTGCGAGGCGCTCGAGTTTGCCCTGCTCGGAG CAGTTGATGAGGGGGCACAAAAACGGATCGATGCAACTCAGTACCTAAGCAATATCCATGAAGGTCGGTTTGTACCTCCT CAGTTAGCGGCATTGGACGCACAAGGTCAGCGAGTTGTCGTTCAAGCGGATGCCGATGCATATCGTTTTTGCTTCATTGA GAAAAACCGTATTGACTCCTTCTCTAGGATTGCTGCAAAACCTACAGGCCAGAAAACCGAGCTAATAGCAGCGTTGTTCG GTATGGACGACTTCAATGAGTTTGTAGGGCAATTTAATGAATCGATTGATACACAGCTCTCGATTCAGCCTGTGCAAGGT CAGGAGCTAACACAAAGACGCCAAGCAATTGCTCATGACACCGAACTACTTGTTGGTGAAGCAGCCTCTATCGCAGCATT CGAGCGGGTTGAGCGAGAGTACGCAGATGCTTTCCAGACAGGATTGACATATGCGCAGTTGCAACAGGCGGTGGGTTCTG CCGAGGTTCCCAGTCGATTACAGACTTTGATAGAAATATTAAATCAACCTGCGCCAGCCCTTTACGGCATACGGCATCAG GACCTCCTTGCTGCATTTAGTGTTGCAGATGAGGCTCAAAAGCTCGTTGAGGAGCTTGTTGGCAAGTTGGCATTACAGCA AGATGGTGCAGCATACCAAAACCTCTACTGCGCAGTTCTTGAACTACAGGCACTTTCTCCTGACCATTGCCCAGCATGCG ATACTACAATTGTTGGGGAACTACACGTTCATGCCAATCCTTTTATAAAGGCTGAACAAGGTCTGGTACATCTGCGGGAG CTGACTCTGCTCAAACAACGATACCAAGCAGCTATTGATCAAAGGCGAGTCGCCTCAGATAACTTGCGCAGGTACTTCGC TAATTTTTCCCAGCGTGTTGGAGCCACTGTCAATAGTGAGCATGAGCTACTCCGCTATCTGGCAAATCCAGGTTTTCAAC CTGATACTGCATGGTGGAAGATCGGGTACAACCCTACTGCCGGAGGCGTATCGCTATCACAACAGGCGGTCAACTACGCA CTTCAGTTAGAGGCGGCTGATACCGCTATCCAGCAAAATCTTAAGCAACGTGCCCAACTTATTACTGAGCGAGATCGTCT TTTCGAAGCGCGTATCGCATTGGCTGAGCATGCTGAACGACGCAAACAAGCTAGTGTAGCAATTGCAAAGGCTCGTCAAC GCGTCGATGTTTTTGAAGCACAAAATACGGCACTGATCACTGCAGTTGTGGAGGAGGAGACCCGCATTGCAGCGGAGGTA AGAATTCAAGTTGCCTACAATAAATTATTGAGTCTGCTACGGCATTACCGCTCGGAGTTACCTGGAACGTTGATGGCGGG TTTGAACGACTTGGCTATGGAGCTGTACAACGAATTCAATGTCCGTGATGCAGCAGAAGATAAGCTGGCAGCTCTACACC TCCCTGTTACTGGGGACGGTCGTATTGAGTTGAGCTTCCAAGGCTCTCCAGAAGCTCGTGTTGATGCTCTTCAGGTTCTG AGTGAAGGGCATGTCAGATGCCTTGGGTTGGCCATCCTATTAGCAAAAGCTTCTCACATCAAGGCACCTACAGTGATCTT CGATGATGCAATAAATGCTATCGACCATGAGCATCGTCAGGGTATTCGGGAGGCATTGTTCCAGAGCGAGCGCTTTGCCA ATACGCAGATCATCGTGACCTGCCACAGCAATGAATTCATCAAAGACATCCAGAATCATATTGATCGTGCCCAGTGGTTA TCTTACACGTTCCGTCATCACACTGGGGATCATCATCCGCGTGTTCTGCGGGATTTGCCTGCACAAGCCTATCTTATAAA CGCTAGGGCTGCTATTGACCGAGGTGACCATCGTGGGGCTCTTCAACCATGTAGACAGGCGTTAGAAATGCTCGCTAACA AGATATGGCGATGGCTCGGGCAGTGTAACCAAGGCGTAATTAGTGTCAAGTTGGCAGGCATCGGAGATCAACCCTCGCTA CGAAATTTGTGCGACGGTCTTCGCGCAAGACTGAATGGTGCACGCACATTCGAACATGTTGATAAACAGCCTTTACTTGA TGCAATTAATCAAATTCTCGGAATACCTGAGCAGACATTGCTATGGCAGTATTTAAATAAAGGGACACATGAGGAGCAGG ATCGAGAAGATTTTGATGAAGGTGTGGTTGAACAGTTGGTTGCTTTAATGGAGACAATAAATAGTTTGAGGCTACGTAAT CCCTAA
Upstream 100 bases:
>100_bases CCGTCACTAATGGCAGAGCTAGAGTTGAAGATGTCTGACTCTTTCAAAGTCAAAAAGGCTATGCCTGAACACAGCAATGT CAGTTACAAAGGAGATTCGG
Downstream 100 bases:
>100_bases AAAACTCACAAGAAAATGCAACAAGCAGATTGAAAAGATGGAGCTAGTGGCTCTCTGTCCTTTAGAAATTAACCTGCAAC ACCGAGACCACAGAAGTTCA
Product: SMC domain-containing protein
Products: NA
Alternate protein names: SMC Protein-Like
Number of amino acids: Translated: 881; Mature: 880
Protein sequence:
>881_residues MASAEHDYQLFIQWLHQPDRETPEDVRRFARLVLDNFESVCATTRHRSQRSVHLVDLARQRFTTTDPDQPQMDAIAVGAG WSWQTLCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGKTSLCEALEFALLGAVDEGAQKRIDATQYLSNIHEGRFVPP QLAALDAQGQRVVVQADADAYRFCFIEKNRIDSFSRIAAKPTGQKTELIAALFGMDDFNEFVGQFNESIDTQLSIQPVQG QELTQRRQAIAHDTELLVGEAASIAAFERVEREYADAFQTGLTYAQLQQAVGSAEVPSRLQTLIEILNQPAPALYGIRHQ DLLAAFSVADEAQKLVEELVGKLALQQDGAAYQNLYCAVLELQALSPDHCPACDTTIVGELHVHANPFIKAEQGLVHLRE LTLLKQRYQAAIDQRRVASDNLRRYFANFSQRVGATVNSEHELLRYLANPGFQPDTAWWKIGYNPTAGGVSLSQQAVNYA LQLEAADTAIQQNLKQRAQLITERDRLFEARIALAEHAERRKQASVAIAKARQRVDVFEAQNTALITAVVEEETRIAAEV RIQVAYNKLLSLLRHYRSELPGTLMAGLNDLAMELYNEFNVRDAAEDKLAALHLPVTGDGRIELSFQGSPEARVDALQVL SEGHVRCLGLAILLAKASHIKAPTVIFDDAINAIDHEHRQGIREALFQSERFANTQIIVTCHSNEFIKDIQNHIDRAQWL SYTFRHHTGDHHPRVLRDLPAQAYLINARAAIDRGDHRGALQPCRQALEMLANKIWRWLGQCNQGVISVKLAGIGDQPSL RNLCDGLRARLNGARTFEHVDKQPLLDAINQILGIPEQTLLWQYLNKGTHEEQDREDFDEGVVEQLVALMETINSLRLRN P
Sequences:
>Translated_881_residues MASAEHDYQLFIQWLHQPDRETPEDVRRFARLVLDNFESVCATTRHRSQRSVHLVDLARQRFTTTDPDQPQMDAIAVGAG WSWQTLCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGKTSLCEALEFALLGAVDEGAQKRIDATQYLSNIHEGRFVPP QLAALDAQGQRVVVQADADAYRFCFIEKNRIDSFSRIAAKPTGQKTELIAALFGMDDFNEFVGQFNESIDTQLSIQPVQG QELTQRRQAIAHDTELLVGEAASIAAFERVEREYADAFQTGLTYAQLQQAVGSAEVPSRLQTLIEILNQPAPALYGIRHQ DLLAAFSVADEAQKLVEELVGKLALQQDGAAYQNLYCAVLELQALSPDHCPACDTTIVGELHVHANPFIKAEQGLVHLRE LTLLKQRYQAAIDQRRVASDNLRRYFANFSQRVGATVNSEHELLRYLANPGFQPDTAWWKIGYNPTAGGVSLSQQAVNYA LQLEAADTAIQQNLKQRAQLITERDRLFEARIALAEHAERRKQASVAIAKARQRVDVFEAQNTALITAVVEEETRIAAEV RIQVAYNKLLSLLRHYRSELPGTLMAGLNDLAMELYNEFNVRDAAEDKLAALHLPVTGDGRIELSFQGSPEARVDALQVL SEGHVRCLGLAILLAKASHIKAPTVIFDDAINAIDHEHRQGIREALFQSERFANTQIIVTCHSNEFIKDIQNHIDRAQWL SYTFRHHTGDHHPRVLRDLPAQAYLINARAAIDRGDHRGALQPCRQALEMLANKIWRWLGQCNQGVISVKLAGIGDQPSL RNLCDGLRARLNGARTFEHVDKQPLLDAINQILGIPEQTLLWQYLNKGTHEEQDREDFDEGVVEQLVALMETINSLRLRN P >Mature_880_residues ASAEHDYQLFIQWLHQPDRETPEDVRRFARLVLDNFESVCATTRHRSQRSVHLVDLARQRFTTTDPDQPQMDAIAVGAGW SWQTLCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGKTSLCEALEFALLGAVDEGAQKRIDATQYLSNIHEGRFVPPQ LAALDAQGQRVVVQADADAYRFCFIEKNRIDSFSRIAAKPTGQKTELIAALFGMDDFNEFVGQFNESIDTQLSIQPVQGQ ELTQRRQAIAHDTELLVGEAASIAAFERVEREYADAFQTGLTYAQLQQAVGSAEVPSRLQTLIEILNQPAPALYGIRHQD LLAAFSVADEAQKLVEELVGKLALQQDGAAYQNLYCAVLELQALSPDHCPACDTTIVGELHVHANPFIKAEQGLVHLREL TLLKQRYQAAIDQRRVASDNLRRYFANFSQRVGATVNSEHELLRYLANPGFQPDTAWWKIGYNPTAGGVSLSQQAVNYAL QLEAADTAIQQNLKQRAQLITERDRLFEARIALAEHAERRKQASVAIAKARQRVDVFEAQNTALITAVVEEETRIAAEVR IQVAYNKLLSLLRHYRSELPGTLMAGLNDLAMELYNEFNVRDAAEDKLAALHLPVTGDGRIELSFQGSPEARVDALQVLS EGHVRCLGLAILLAKASHIKAPTVIFDDAINAIDHEHRQGIREALFQSERFANTQIIVTCHSNEFIKDIQNHIDRAQWLS YTFRHHTGDHHPRVLRDLPAQAYLINARAAIDRGDHRGALQPCRQALEMLANKIWRWLGQCNQGVISVKLAGIGDQPSLR NLCDGLRARLNGARTFEHVDKQPLLDAINQILGIPEQTLLWQYLNKGTHEEQDREDFDEGVVEQLVALMETINSLRLRNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98860; Mature: 98729
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAEHDYQLFIQWLHQPDRETPEDVRRFARLVLDNFESVCATTRHRSQRSVHLVDLARQ CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RFTTTDPDQPQMDAIAVGAGWSWQTLCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGK HCCCCCCCCCCCCEEEECCCCCHHHEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCH TSLCEALEFALLGAVDEGAQKRIDATQYLSNIHEGRFVPPQLAALDAQGQRVVVQADADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCC YRFCFIEKNRIDSFSRIAAKPTGQKTELIAALFGMDDFNEFVGQFNESIDTQLSIQPVQG EEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCC QELTQRRQAIAHDTELLVGEAASIAAFERVEREYADAFQTGLTYAQLQQAVGSAEVPSRL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH QTLIEILNQPAPALYGIRHQDLLAAFSVADEAQKLVEELVGKLALQQDGAAYQNLYCAVL HHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ELQALSPDHCPACDTTIVGELHVHANPFIKAEQGLVHLRELTLLKQRYQAAIDQRRVASD HHHCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLRRYFANFSQRVGATVNSEHELLRYLANPGFQPDTAWWKIGYNPTAGGVSLSQQAVNYA HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH LQLEAADTAIQQNLKQRAQLITERDRLFEARIALAEHAERRKQASVAIAKARQRVDVFEA EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QNTALITAVVEEETRIAAEVRIQVAYNKLLSLLRHYRSELPGTLMAGLNDLAMELYNEFN CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC VRDAAEDKLAALHLPVTGDGRIELSFQGSPEARVDALQVLSEGHVRCLGLAILLAKASHI CCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC KAPTVIFDDAINAIDHEHRQGIREALFQSERFANTQIIVTCHSNEFIKDIQNHIDRAQWL CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHH SYTFRHHTGDHHPRVLRDLPAQAYLINARAAIDRGDHRGALQPCRQALEMLANKIWRWLG HHHHHHCCCCCCCHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH QCNQGVISVKLAGIGDQPSLRNLCDGLRARLNGARTFEHVDKQPLLDAINQILGIPEQTL HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHH LWQYLNKGTHEEQDREDFDEGVVEQLVALMETINSLRLRNP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASAEHDYQLFIQWLHQPDRETPEDVRRFARLVLDNFESVCATTRHRSQRSVHLVDLARQ CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RFTTTDPDQPQMDAIAVGAGWSWQTLCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGK HCCCCCCCCCCCCEEEECCCCCHHHEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCH TSLCEALEFALLGAVDEGAQKRIDATQYLSNIHEGRFVPPQLAALDAQGQRVVVQADADA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCC YRFCFIEKNRIDSFSRIAAKPTGQKTELIAALFGMDDFNEFVGQFNESIDTQLSIQPVQG EEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCC QELTQRRQAIAHDTELLVGEAASIAAFERVEREYADAFQTGLTYAQLQQAVGSAEVPSRL HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH QTLIEILNQPAPALYGIRHQDLLAAFSVADEAQKLVEELVGKLALQQDGAAYQNLYCAVL HHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH ELQALSPDHCPACDTTIVGELHVHANPFIKAEQGLVHLRELTLLKQRYQAAIDQRRVASD HHHCCCCCCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLRRYFANFSQRVGATVNSEHELLRYLANPGFQPDTAWWKIGYNPTAGGVSLSQQAVNYA HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH LQLEAADTAIQQNLKQRAQLITERDRLFEARIALAEHAERRKQASVAIAKARQRVDVFEA EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QNTALITAVVEEETRIAAEVRIQVAYNKLLSLLRHYRSELPGTLMAGLNDLAMELYNEFN CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC VRDAAEDKLAALHLPVTGDGRIELSFQGSPEARVDALQVLSEGHVRCLGLAILLAKASHI CCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC KAPTVIFDDAINAIDHEHRQGIREALFQSERFANTQIIVTCHSNEFIKDIQNHIDRAQWL CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHH SYTFRHHTGDHHPRVLRDLPAQAYLINARAAIDRGDHRGALQPCRQALEMLANKIWRWLG HHHHHHCCCCCCCHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH QCNQGVISVKLAGIGDQPSLRNLCDGLRARLNGARTFEHVDKQPLLDAINQILGIPEQTL HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCCCHHHH LWQYLNKGTHEEQDREDFDEGVVEQLVALMETINSLRLRNP HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA