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The map label for this gene is yciR [C]

Identifier: 126175876

GI number: 126175876

Start: 4299837

End: 4301789

Strand: Direct

Name: yciR [C]

Synonym: Sbal_3681

Alternate gene names: 126175876

Gene position: 4299837-4301789 (Clockwise)

Preceding gene: 126175874

Following gene: 126175877

Centisome position: 83.86

GC content: 45.16

Gene sequence:

>1953_bases
ATGCCATACAATTTCGCCATTAATCAGTCTCAAAAAGATCGTTTATTCGCCGACATTGCTATCGACACAGACAAAATCGT
GGTTCCCCAAATAATGGTTGATAACTGGCAACAAACCTTAGATTTGCTCTCTGAATTGGTCGACACACCCGCGGCTTTAA
TCATGCGTGTCCATCAAACCGATATAGAGGTTTTTACCTCGAGCCGCACTCAGGGGAATCCCTATAAAAAACACGACAAA
GACAGTTTAGGCCACGGACTTTACTGCGAGACAGTGATAAAAGCAGGCAAGGAACTCCACATTCCGAATGCCCTAAAAGA
TAAAGACTGGGATAAAAATCCTGATATTAAACTCGGCATGATTGCCTACTGTGGCTTACCTTTACGCTGGCCCGATAACA
GCGCCTTTGGCACTATCTGCATGCTCGATAACAAAGAGCATAATTACAGCCAATCGTTTCGCAGCTTACTCGCTCGTTTT
CAAAATGGTATAGAAGCCAACCTAGTCACCCTCTATCAACAGGCAAAGCTGCAACTGCACAACCAAGAGTTAGAGCAAAA
AGTGCAACAACGCACCCATGAACTGGCCGAACTCAGTAGCAAACTCATCAAAGAAATCGAAAATCGGACCTCCACCGAAA
CCTCACTGGAATACCATAAAAGCTATGATCCACTGACGGGATTACCGAATCGCATCAATTTGATTAATAGCCTTTCGACT
ATGCTCGAAGAAGTGAATCGCAAGGAAAAGATTTCAGTACTCTATCTGGGGCTGCGTAATTTCAAGTCCATCAACGACAG
TTATGGCTACCTGATTGGCGATAAAATTCTCACCATTCTCAGCCAACGTTTACAACACTATGCCGATGAAAATACCTTCA
TCGCCCGTATTGCCGGCGCCGAGTTTGTGATTATTCAAGCCCATAAACCTTCGAACAACGAAACCAACAAACTCATCAAT
AAAGTGCTTAGCTGCTGTAATACCCCCTTTGGCGTGGCGGATTTTGTGATCACTATTCCATCGAGCATGGGTATAGCTCA
AGCGCCCATCGATGGCATAGATGCCGCCATTCTGCTGCAAAAAGCAGGGGCTGCGATGACGATCAGCAAAGCCGATGGCT
CAACTCACAGCTTCTTTAATCAAGATACTCAAGCGGCTTTGAATCTACGCTATCAACTGGAATCTCACTTAGTCGATGCA
TTGAACAAAAACGAGTTAAGCCTTCATTACCAACCCTTTATTAACTTAAAAAACCAAAAGGTGATAGGCGCCGAAGCCCT
GCTGCGCTGGCACAATCCGATCCTTGGCAATGTCACCCCAGACAGATTCATCGCCTTAGCAGAACGTAATGGACAGATTA
TTGATATCGGTAATTTTGTATTGCATACCGCTCTGGCTCAGGCGGCAAAATGGTGTCGCGAGCTAGACCAGGAGTTTAAA
ATCGCCATCAATATCTCCCCTTTGCAAATGCGCAATCCCCGTTTTAGCGAGCACATAGCTGACTTACTCACCCTCTATCA
ATTGCCACCGACTGCCCTAGAGCTTGAAATCACCGAAGGCATGCTGATGCAGGACGAGCACATTGCCCACAATGCCATCC
AAAAGCTACAGGAACTCGGGATCCGCATCTCCTTAGATGACTTTGGTACTGGCTATTCATCCCTAAGTTATCTACAAAAA
TACTCTTTCGACACCTTAAAAATCGATCGCTGTTTTATCAATAAACTCGAAGAAAACGAACAAGATAGGGAGCTCACTAA
AGCGATTATTGCCATAGGCAAGAAACTGAACTTAGTCGTGATCGCCGAAGGCGTGGAAACCCTAGAACAAGATGCCTTTA
TTCGTCACGAGGAATGCGACTTAGGCCAAGGCTACCTCTACGGTAAACCCATCACAGCACACGAGCCCCCTGTGTCAGGA
TTGTTGTCACCCCTAAATAATCATTATTTTTAA

Upstream 100 bases:

>100_bases
ATTTACATCGCAATACAACTAAATTTATTCAAAAAACTCACAACATGAGTAAAAAGACTATAGTTTATAAATAATATCGC
GCCTCTAGGACTGAGCATTC

Downstream 100 bases:

>100_bases
AGACAGGGTGCGGCAAAAGAGAATGATATGGCTCGGTATTCACCAGAACGTAAAGAGGCGATCCTTAAAAAATTATTACC
TCCTCACAACTTAACGGTCG

Product: diguanylate cyclase/phosphodiesterase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 649

Protein sequence:

>650_residues
MPYNFAINQSQKDRLFADIAIDTDKIVVPQIMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDK
DSLGHGLYCETVIKAGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARF
QNGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLIN
KVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDA
LNKNELSLHYQPFINLKNQKVIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEPPVSG
LLSPLNNHYF

Sequences:

>Translated_650_residues
MPYNFAINQSQKDRLFADIAIDTDKIVVPQIMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDK
DSLGHGLYCETVIKAGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARF
QNGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLIN
KVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDA
LNKNELSLHYQPFINLKNQKVIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQK
YSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEPPVSG
LLSPLNNHYF
>Mature_649_residues
PYNFAINQSQKDRLFADIAIDTDKIVVPQIMVDNWQQTLDLLSELVDTPAALIMRVHQTDIEVFTSSRTQGNPYKKHDKD
SLGHGLYCETVIKAGKELHIPNALKDKDWDKNPDIKLGMIAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQ
NGIEANLVTLYQQAKLQLHNQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLSTM
LEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINK
VLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDAL
NKNELSLHYQPFINLKNQKVIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFKI
AINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKY
SFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEPPVSGL
LSPLNNHYF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=32.7710843373494, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI87081921, Length=546, Percent_Identity=31.1355311355311, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI226510982, Length=414, Percent_Identity=28.0193236714976, Blast_Score=161, Evalue=2e-40,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=36.5145228215768, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=31.8367346938775, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=34.5098039215686, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI87081845, Length=281, Percent_Identity=30.2491103202847, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=32.3651452282158, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=32.9268292682927, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=30.0847457627119, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=274, Percent_Identity=30.6569343065693, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=24.824355971897, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87081977, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=137, Percent_Identity=26.2773722627737, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=24.1071428571429, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 73436; Mature: 73305

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYNFAINQSQKDRLFADIAIDTDKIVVPQIMVDNWQQTLDLLSELVDTPAALIMRVHQT
CCCCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DIEVFTSSRTQGNPYKKHDKDSLGHGLYCETVIKAGKELHIPNALKDKDWDKNPDIKLGM
HHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEE
IAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQNGIEANLVTLYQQAKLQLH
HEECCCCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
EFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQ
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCHHHHHH
KAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDALNKNELSLHYQPFINLKNQK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCE
VIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
EECHHHHHHHCCCCCCCCCHHHEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEE
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELG
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE
IAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEPPVSGLLSPLNNHYF
EECCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PYNFAINQSQKDRLFADIAIDTDKIVVPQIMVDNWQQTLDLLSELVDTPAALIMRVHQT
CCCCCCCCCCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DIEVFTSSRTQGNPYKKHDKDSLGHGLYCETVIKAGKELHIPNALKDKDWDKNPDIKLGM
HHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEE
IAYCGLPLRWPDNSAFGTICMLDNKEHNYSQSFRSLLARFQNGIEANLVTLYQQAKLQLH
HEECCCCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NQELEQKVQQRTHELAELSSKLIKEIENRTSTETSLEYHKSYDPLTGLPNRINLINSLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
MLEEVNRKEKISVLYLGLRNFKSINDSYGYLIGDKILTILSQRLQHYADENTFIARIAGA
HHHHHCCHHEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
EFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITIPSSMGIAQAPIDGIDAAILLQ
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCCCCHHHHHH
KAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVDALNKNELSLHYQPFINLKNQK
HCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCE
VIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNFVLHTALAQAAKWCRELDQEFK
EECHHHHHHHCCCCCCCCCHHHEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEE
IAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEITEGMLMQDEHIAHNAIQKLQELG
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEECHHHHHHHHHHHHHHCC
IRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEENEQDRELTKAIIAIGKKLNLVV
CEEEECCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE
IAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEPPVSGLLSPLNNHYF
EECCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]