| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is ymfN [C]
Identifier: 126175807
GI number: 126175807
Start: 4237980
End: 4238729
Strand: Reverse
Name: ymfN [C]
Synonym: Sbal_3612
Alternate gene names: 126175807
Gene position: 4238729-4237980 (Counterclockwise)
Preceding gene: 126175808
Following gene: 126175806
Centisome position: 82.67
GC content: 50.13
Gene sequence:
>750_bases ATGAGTATGGAATTGATGGTAAAAGCGATGAAGGCCAAGGTGGGTAATCCACTGCGTAAGTTGGTGTTGATTAAGCTGGC CGACAACGCGAACGATAATGGTGAGTGTTGGCCGAGCCATCAGCATATTGCTGACCAGTGCGAGATTGGTCATAGCACAG TGAGAAAGCATATTGCGGCCTTGGTTGATATGGGTTTTGTGACGATTAAAAATCGTAAGGGACCTAAGGGAAATTTAACC AATATTTACACGATTTCAATCTGCTACGAGGTAGCACCCCCTGTGCTAGCAGATAGCACCGAAGGGGTGCCACCAGATAG CATAGGTATGCCACCAGATAGCACACCCCCTGTGCCACCAGATAGCACCGGAATCTATCACTCTTTTGAACCTATCAAAG AATCTTTAAAAGATAGTTGTCCAGCAACGAGTGCTAAGTCGGTTTTCAATGCGTTTTTTAAAGCGTATCCCGCTCATCGC AAAGGCGGGGCGGATTCGGCTGCGTGGAAAGCGTGGAAGGCCGAAAAGCTGACCGACGCCGATTGTGTGTTGGCGGTGAG CTGGTTGAAGGAGGCTGCGGCGCTGGATGCGAGTTGGGGCTTTAGCGCTAACGGCCAGTTTGTGTTGGGTATTACCAAGT TTATCCGTGAACGCCATTGGCTAACACCGTTGCCAAGACCGATAGCAACTGCCGTTGGGCAAGTGGATTGGCGCCATGCG GTGTACGACCCAGAGGATCCTTTGATATGA
Upstream 100 bases:
>100_bases CAGGCGCGGGCTTAATACCTAAGAGAGGCGATTACATGTTACGAAAGCATGGGGGTTGCGTCAATTCGGCTTTGTGGGTT ACTCCGTTTGGGGGTGGTTT
Downstream 100 bases:
>100_bases CTGCCAAGCAAAATACGAGCATGAAATCACTGCAGACCTTAATCCGCCAGCCGCTGGTTGGACAGGGCGCGCGGGTGACA CAACCCGAGCCTACGGCAAT
Product: putative replication protein
Products: NA
Alternate protein names: Phage Replication Protein; Transcriptional Regulator; Replication Of DNA; Replication Protein Phage; Bacteriophage Replication Protein
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MSMELMVKAMKAKVGNPLRKLVLIKLADNANDNGECWPSHQHIADQCEIGHSTVRKHIAALVDMGFVTIKNRKGPKGNLT NIYTISICYEVAPPVLADSTEGVPPDSIGMPPDSTPPVPPDSTGIYHSFEPIKESLKDSCPATSAKSVFNAFFKAYPAHR KGGADSAAWKAWKAEKLTDADCVLAVSWLKEAAALDASWGFSANGQFVLGITKFIRERHWLTPLPRPIATAVGQVDWRHA VYDPEDPLI
Sequences:
>Translated_249_residues MSMELMVKAMKAKVGNPLRKLVLIKLADNANDNGECWPSHQHIADQCEIGHSTVRKHIAALVDMGFVTIKNRKGPKGNLT NIYTISICYEVAPPVLADSTEGVPPDSIGMPPDSTPPVPPDSTGIYHSFEPIKESLKDSCPATSAKSVFNAFFKAYPAHR KGGADSAAWKAWKAEKLTDADCVLAVSWLKEAAALDASWGFSANGQFVLGITKFIRERHWLTPLPRPIATAVGQVDWRHA VYDPEDPLI >Mature_248_residues SMELMVKAMKAKVGNPLRKLVLIKLADNANDNGECWPSHQHIADQCEIGHSTVRKHIAALVDMGFVTIKNRKGPKGNLTN IYTISICYEVAPPVLADSTEGVPPDSIGMPPDSTPPVPPDSTGIYHSFEPIKESLKDSCPATSAKSVFNAFFKAYPAHRK GGADSAAWKAWKAEKLTDADCVLAVSWLKEAAALDASWGFSANGQFVLGITKFIRERHWLTPLPRPIATAVGQVDWRHAV YDPEDPLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27157; Mature: 27026
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMELMVKAMKAKVGNPLRKLVLIKLADNANDNGECWPSHQHIADQCEIGHSTVRKHIAA CCHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH LVDMGFVTIKNRKGPKGNLTNIYTISICYEVAPPVLADSTEGVPPDSIGMPPDSTPPVPP HHHHCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSTGIYHSFEPIKESLKDSCPATSAKSVFNAFFKAYPAHRKGGADSAAWKAWKAEKLTDA CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH DCVLAVSWLKEAAALDASWGFSANGQFVLGITKFIRERHWLTPLPRPIATAVGQVDWRHA HHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHC VYDPEDPLI CCCCCCCCC >Mature Secondary Structure SMELMVKAMKAKVGNPLRKLVLIKLADNANDNGECWPSHQHIADQCEIGHSTVRKHIAA CHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH LVDMGFVTIKNRKGPKGNLTNIYTISICYEVAPPVLADSTEGVPPDSIGMPPDSTPPVPP HHHHCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DSTGIYHSFEPIKESLKDSCPATSAKSVFNAFFKAYPAHRKGGADSAAWKAWKAEKLTDA CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCH DCVLAVSWLKEAAALDASWGFSANGQFVLGITKFIRERHWLTPLPRPIATAVGQVDWRHA HHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHC VYDPEDPLI CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA