Click here to switch to the map view.

The map label for this gene is tolC [H]

Identifier: 126175774

GI number: 126175774

Start: 4204703

End: 4206010

Strand: Direct

Name: tolC [H]

Synonym: Sbal_3578

Alternate gene names: 126175774

Gene position: 4204703-4206010 (Clockwise)

Preceding gene: 126175766

Following gene: 126175777

Centisome position: 82.0

GC content: 43.35

Gene sequence:

>1308_bases
ATGAAATTTAAGATCCATAATTTATGCGCAGCATTAACACTTGCGGCTTCCGCTTCAGCGGTGCAAGCAGATGATTTGTT
GCAAATTTATCAACAAGCACTGACCAGCGACCCGCTCGTATTGCAAGCTCAAGCCCAGCGTAATGGTTTGTTTGAACAAA
TCGAACAAAACCGTGCACCGCTGTTGCCAACCATTAGTGCAAACGTCGGTTACGACAAAGCTTGGAATGATCCGAAGGAT
GATTCAAGCGGTCTAGTAGGTAGCCTGAAATTAAATCAAGTTATCTATGATCACAGTGCTTGGGTCGGTTTAAGCCTTGC
TGAGAAAGCCGCTTCTCAAGCTGATTCTGCCTATGCTTCAGCATTACAAAACCTGATTACTCGTATCACTACAGCCTATT
TCAACGTATTAACGGCGAAAGACAACTACGAGTTCCAAGGTGCAGAAAAACGCGCGATCGAACGTCAACTTGAACAAACT
AAACAACGTTTTGCAGTGGGGTTAACCGCAATTACCGATGTGCATGAAGCCCAAGCTCAATATGACTTAGCCTCAGCCAC
TGAAATTTTAGCTGAAAACACACTCGCTAATAGCTATGAAGCCTTACGTGAAATCACTGGCATCGATCACAAGACAATTA
ACGTGTTAGATACCAACCGTTTCTCGGCCGTTACGCCAGCGCCAACGTCGTCAAACGAATGGTTGAAGATTGCTGAAACC
AATAGCGTCGATTTGATGACTCAACGTATCGGTAAAGATATCGCTCAAGAAACCATTAAGCTTTATCAAGCAGGCCACAT
GCCTTCTTTAAGCTTGAATGCAGGTTACAACAAAGGTCTTGAGCAAAAAACCGGTAATATCAATGAGCCTGACTTTGATA
ACGTCAGTGTCGGTGTCAACTTAAGCATTCCGATTTTCGAAGGCTTTAAAGTGAGCTCACAAGTTAATCAAGCGCAATTT
CAATATGTTGAAGCGAGTGAAAAACTTGAACAAGTTTACCGCGGTGTAGTGAAAAACGTCCGTAATAACTACAACAACGT
AGGCGCTTCTATCAGTTCAATCAAAGCCTATGAGCAATCAGTAATTTCATCAGAAAGTGCACTGAAAGCCACTCAAGCGG
GCTTTGAAGTGGGTACGCGTACTATCGTTGACGTATTGAACCGTACTCGTGACTTGTACGACTCAAAACGTAAGCTATCA
GATGCACGTTATAGCTACATCAACTCGGTCATTGCCTTGAAGCAAGCTGCGGGTACATTGAATGAAGATGACGTGATTGC
CATCAACAATGGCTTAATTGCAGAGTAA

Upstream 100 bases:

>100_bases
AGCGTCGGGAAGCGCAAACCGCCTTGGTAAAGGCATTACTTAGTCTAAACGAAGTTAAAATATTCCTCCGTGGGGGGATT
TTGTCTAATAAGGACAGCAA

Downstream 100 bases:

>100_bases
TCTCACTCTCGGTTCTCAGCTATATAAAGTTGTCAGATAAAAAAACCGCCGATAGGCGGTTTTTTTATACTCAAACGCTA
AATCAACAGATTAGAAGTTG

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKFKIHNLCAALTLAASASAVQADDLLQIYQQALTSDPLVLQAQAQRNGLFEQIEQNRAPLLPTISANVGYDKAWNDPKD
DSSGLVGSLKLNQVIYDHSAWVGLSLAEKAASQADSAYASALQNLITRITTAYFNVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSNEWLKIAET
NSVDLMTQRIGKDIAQETIKLYQAGHMPSLSLNAGYNKGLEQKTGNINEPDFDNVSVGVNLSIPIFEGFKVSSQVNQAQF
QYVEASEKLEQVYRGVVKNVRNNYNNVGASISSIKAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSVIALKQAAGTLNEDDVIAINNGLIAE

Sequences:

>Translated_435_residues
MKFKIHNLCAALTLAASASAVQADDLLQIYQQALTSDPLVLQAQAQRNGLFEQIEQNRAPLLPTISANVGYDKAWNDPKD
DSSGLVGSLKLNQVIYDHSAWVGLSLAEKAASQADSAYASALQNLITRITTAYFNVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSNEWLKIAET
NSVDLMTQRIGKDIAQETIKLYQAGHMPSLSLNAGYNKGLEQKTGNINEPDFDNVSVGVNLSIPIFEGFKVSSQVNQAQF
QYVEASEKLEQVYRGVVKNVRNNYNNVGASISSIKAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSVIALKQAAGTLNEDDVIAINNGLIAE
>Mature_435_residues
MKFKIHNLCAALTLAASASAVQADDLLQIYQQALTSDPLVLQAQAQRNGLFEQIEQNRAPLLPTISANVGYDKAWNDPKD
DSSGLVGSLKLNQVIYDHSAWVGLSLAEKAASQADSAYASALQNLITRITTAYFNVLTAKDNYEFQGAEKRAIERQLEQT
KQRFAVGLTAITDVHEAQAQYDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSNEWLKIAET
NSVDLMTQRIGKDIAQETIKLYQAGHMPSLSLNAGYNKGLEQKTGNINEPDFDNVSVGVNLSIPIFEGFKVSSQVNQAQF
QYVEASEKLEQVYRGVVKNVRNNYNNVGASISSIKAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLS
DARYSYINSVIALKQAAGTLNEDDVIAINNGLIAE

Specific function: May be specialized for signal sequence independent, extracellular secretion in Gram-negative bacteria [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=425, Percent_Identity=44, Blast_Score=332, Evalue=3e-92,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47613; Mature: 47613

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKIHNLCAALTLAASASAVQADDLLQIYQQALTSDPLVLQAQAQRNGLFEQIEQNRAP
CCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHCCCCC
LLPTISANVGYDKAWNDPKDDSSGLVGSLKLNQVIYDHSAWVGLSLAEKAASQADSAYAS
CCCEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRITTAYFNVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ
HHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSNEWLKIAET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCCCEEEEECC
NSVDLMTQRIGKDIAQETIKLYQAGHMPSLSLNAGYNKGLEQKTGNINEPDFDNVSVGVN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEEEE
LSIPIFEGFKVSSQVNQAQFQYVEASEKLEQVYRGVVKNVRNNYNNVGASISSIKAYEQS
EEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHH
VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSVIALKQAAGTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NEDDVIAINNGLIAE
CCCCEEEECCCCCCC
>Mature Secondary Structure
MKFKIHNLCAALTLAASASAVQADDLLQIYQQALTSDPLVLQAQAQRNGLFEQIEQNRAP
CCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHCCHHHHHHCCCCC
LLPTISANVGYDKAWNDPKDDSSGLVGSLKLNQVIYDHSAWVGLSLAEKAASQADSAYAS
CCCEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ALQNLITRITTAYFNVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQ
HHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDLASATEILAENTLANSYEALREITGIDHKTINVLDTNRFSAVTPAPTSSNEWLKIAET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCCCEEEEECC
NSVDLMTQRIGKDIAQETIKLYQAGHMPSLSLNAGYNKGLEQKTGNINEPDFDNVSVGVN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHCCCCCCCCCCCCEEEEEE
LSIPIFEGFKVSSQVNQAQFQYVEASEKLEQVYRGVVKNVRNNYNNVGASISSIKAYEQS
EEEECCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHH
VISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSVIALKQAAGTL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NEDDVIAINNGLIAE
CCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]