Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 126175713

GI number: 126175713

Start: 4125131

End: 4125613

Strand: Reverse

Name: ydaM [H]

Synonym: Sbal_3516

Alternate gene names: 126175713

Gene position: 4125613-4125131 (Counterclockwise)

Preceding gene: 126175714

Following gene: 126175712

Centisome position: 80.46

GC content: 45.34

Gene sequence:

>483_bases
TTGACGCGCTATAATCCCCTGACCAAGTTGTATAACCGACATTACTTTAATCGCCTTTTTATTAATAATGAGCAGCATGA
TCAATCTGCTGAAGCAGGCATGTGCTTGGTGATGATTGATATCGATTACTTTAAAGATATTAATGACACGCTAGGGCATA
ACGTCGGGGATCGGATCCTTGAGCAAGTGTCGCAGGTGCTACAGCACTGTGTGCGTGAATCTGATGTGGTTGCACGTTGG
GGCGGCGAAGAGTTTGTGATCCTCTGTCAGCAGTCATCTTTACCCTTAGTTGAAAGCTTGTGTGTGCGGATAGCTGAGAG
GATCAAACGTTATCAATTTACTGACAATGTGCAGTTAACTTGCAGTTTTGGCGTCGCTAAGCTTGCCGATAACGAACCTA
TGATGTTGTGCTTTGAACGTGCTGATCGCGCGCTTTATCGCGCTAAAGCACAAGGGCGTAATCAAATGTGCACCGACAAG
TAA

Upstream 100 bases:

>100_bases
TGCAAAGGAGAAAGCTACAGGCGAAAAGAAGCCCAAAACAAACTAAATTAAACCGAGTCTCAACCGGCCAAGTTAATTGT
CGCTGGATCGGCCAAGCTAA

Downstream 100 bases:

>100_bases
GTATATACGCAAGCGTGATTTGCCGTTATCTGAGCAAATGGCTTCCACTCAGTTGAATCAAGGATGTCATCTTTATTTCT
AAGAAAGGATTAGCATTATT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTRYNPLTKLYNRHYFNRLFINNEQHDQSAEAGMCLVMIDIDYFKDINDTLGHNVGDRILEQVSQVLQHCVRESDVVARW
GGEEFVILCQQSSLPLVESLCVRIAERIKRYQFTDNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMCTDK

Sequences:

>Translated_160_residues
MTRYNPLTKLYNRHYFNRLFINNEQHDQSAEAGMCLVMIDIDYFKDINDTLGHNVGDRILEQVSQVLQHCVRESDVVARW
GGEEFVILCQQSSLPLVESLCVRIAERIKRYQFTDNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMCTDK
>Mature_159_residues
TRYNPLTKLYNRHYFNRLFINNEQHDQSAEAGMCLVMIDIDYFKDINDTLGHNVGDRILEQVSQVLQHCVRESDVVARWG
GEEFVILCQQSSLPLVESLCVRIAERIKRYQFTDNVQLTCSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMCTDK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=153, Percent_Identity=36.6013071895425, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=38.6075949367089, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.3658536585366, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=35.7575757575758, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787816, Length=152, Percent_Identity=32.2368421052632, Blast_Score=86, Evalue=8e-19,
Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=32.2981366459627, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=29.4478527607362, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=159, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=28.6666666666667, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=32.4503311258278, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=32.0261437908497, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 18589; Mature: 18457

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYNPLTKLYNRHYFNRLFINNEQHDQSAEAGMCLVMIDIDYFKDINDTLGHNVGDRIL
CCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHCCCHHHHHH
EQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKRYQFTDNVQLT
HHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
CSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMCTDK
EECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TRYNPLTKLYNRHYFNRLFINNEQHDQSAEAGMCLVMIDIDYFKDINDTLGHNVGDRIL
CCCCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHCCCHHHHHH
EQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKRYQFTDNVQLT
HHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
CSFGVAKLADNEPMMLCFERADRALYRAKAQGRNQMCTDK
EECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]