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The map label for this gene is rbfA [H]

Identifier: 126175438

GI number: 126175438

Start: 3796414

End: 3796887

Strand: Reverse

Name: rbfA [H]

Synonym: Sbal_3238

Alternate gene names: 126175438

Gene position: 3796887-3796414 (Counterclockwise)

Preceding gene: 126175439

Following gene: 126175437

Centisome position: 74.05

GC content: 45.57

Gene sequence:

>474_bases
ATGGTAAGAAATATTATGGCAAAAGAATTCAGTCGTACTCGTCGAATCGCTCAGCAGCTTCAGCAAGAACTTGCTCAAGT
GCTACAGCGCGACATGAAAGATCCTCGTATTGGCTTTGTAACCGTGAATGACGTCGATGTCTCACGCGACCTTAGCTATG
CCAAAGTCTTCGTGACTTTTTTTGAGGAAGATAAAGCCGTTGTTCAAGAAAAGCTAAACGCTTTGATCAGCGCCGCTCCT
TATATCCGCACTTTAGTGGCGGGCCGTATGAAGCTGCGTGTGATGCCTGAACTGCGTTTTATCTATGATAGCTCGCTCGT
TGAAGGTATGCGCATGTCTAACTTAGTTAGCCAAGTGATCAACCAAGACAAAGCGAAGCAGCAGCAATTTGGCAGCGAAG
ACGCATCGGTTGAAGATGAAGTCTTAGGTGATGATGTTGCCGATGATGCAGATGAAACGGAAGGTAAAGATTAA

Upstream 100 bases:

>100_bases
TCGCGTAGGCGACCAAATCGAAGTATTCGAAACCGTCGAGATTGCTCGTACTCTGTAACGATAATAAGGGCGGCTTTAGC
CGCCCTTATCAATTTAAGCT

Downstream 100 bases:

>100_bases
TGGCTCGTCGTCCAAAAGGTCGTTTTATCGATGGGATAGTGCTGCTGGATAAATCCACGGGCATGAGTTCTAACTTTGCA
TTGCAAAGGGTAAAGCGCTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEDASVEDEVLGDDVADDADETEGKD

Sequences:

>Translated_157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEDASVEDEVLGDDVADDADETEGKD
>Mature_157_residues
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAP
YIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVINQDKAKQQQFGSEDASVEDEVLGDDVADDADETEGKD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=52.4193548387097, Blast_Score=136, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 17851; Mature: 17851

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCHHHHHHHHHH
FEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQDKAKQQQFGSEDASVEDEVLGDDVADDADETEGKD
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRNIMAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVFVTF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCHHHHHHHHHH
FEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSQVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQDKAKQQQFGSEDASVEDEVLGDDVADDADETEGKD
HHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA