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The map label for this gene is deoB [H]

Identifier: 126175425

GI number: 126175425

Start: 3780038

End: 3781252

Strand: Reverse

Name: deoB [H]

Synonym: Sbal_3225

Alternate gene names: 126175425

Gene position: 3781252-3780038 (Counterclockwise)

Preceding gene: 126175426

Following gene: 126175424

Centisome position: 73.75

GC content: 47.74

Gene sequence:

>1215_bases
ATGAAACGTACCATTATTATGATGTTGGACTCCTTTGGAGTCGGTGCTTCTGCTGATGCAGCAAGTTTTGGTGATGTCGG
TTCCGATACTTTTGGTCATATTGCTAAAGCATGTGCTGAAGGCAAAGCCGATATTGGCCGTGAAGGCCCACTTAAATTAC
CTAACCTAGCGCGCTTAGGCTTAGGCCATGCGGCGATGGAAAGTACTGGCGCCTTTGCCCCCGGTTTTGGCGATAATGTT
GAGCTGATTGGTGCTTATGGTCATGCACAAGAGTTAAGTTCGGGTAAAGATACCCCGAGCGGTCACTGGGAAATGGCGGG
CGTGCCCGTACTATTCGAATGGGGCTACTTTAGCGAGCACCAAAATTCTTTCCCTAAAGAACTGACGGATAAGATTTTAG
CCCGTGCGGGTCTGGATGGTTTCTTAGGTAACTGCCATGCCTCAGGTACAACCATTTTAGAAGAGTTAGGCGAAGAGCAT
ATGCGCTCTGGCATGCCTATTTTCTATACCTCAGCCGATTCTGTGTTTCAAATCGCCTGCCATGAAGAAACCTTCGGTTT
AGATAATCTCTATCGTCTTTGCGAAATAACCCGTGAAGAGTTAGAGCCTTACAACATAGGTCGCGTTATTGCCCGTCCAT
TTGATGGTACTGGCCCAAGTGACTTTGCCCGTACTGGTAATCGTAAAGATTATTCGCTGGCGCCACCTGCAAAAACCGTA
TTAGATAAGCTGAATGAAGCGGGCGGTGAAGTGGTGAGTGTGGGCAAGATTGCCGACATTTATGCTTACTGCGGTATCAC
TAAAAAAGTGAAGGCGAACGGCTTAGAAGCGCTTTTCGATGCGACCTTAGCCGAAGTGAAATCTGCGGGTGATAACACTA
TAGTGTTTACTAACTTCGTGGATTTTGACTCTCACTATGGTCATCGCCGTGATGTGGCTGGTTACGCTAAAGGGTTGGAA
TATTTCGACGCCCGTTTGCCTGAGATGCTCGCATTATTGGGTGAAGACGATCTGCTGATTCTAACGGCGGATCACGGTTG
CGATCCAACATGGCAAGGCACGGATCATACCCGTGAATATGTGCCAGTATTAGCCTTTGGCGCTGGATTGAAAGCAGGTT
CTCTTGGTCGTCGTAAGAGCTTTGCTGATATCGGCCAATCTATTGCGAGCCACTTTAAGCTTGAACCTATGGCCTATGGT
GAATCTTTCCTTTAG

Upstream 100 bases:

>100_bases
ACTTGCGGTGAAAAAAGCGATTCACATTGGTGAAACCGCTCCAGAAAAAACACCTGAGATCTATGCCTATATTCGTGCAT
CGGATCTTTAAGGAAAAATT

Downstream 100 bases:

>100_bases
GCAAATTAGCATTTATTTCGATTTGGCGGCTGACATTTGCCGTCAGTAAACAAAGACTTAAGTCTTAATAAAATAAACAG
GGGTTATTTCGATGGCAACA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGMPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTV
LDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYG
ESFL

Sequences:

>Translated_404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGMPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTV
LDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYG
ESFL
>Mature_404_residues
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLGLGHAAMESTGAFAPGFGDNV
ELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEH
MRSGMPIFYTSADSVFQIACHEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTV
LDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFVDFDSHYGHRRDVAGYAKGLE
YFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREYVPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYG
ESFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=70.02457002457, Blast_Score=590, Evalue=1e-170,
Organism=Escherichia coli, GI1789781, Length=436, Percent_Identity=27.7522935779816, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43486; Mature: 43486

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
CCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGMPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHH
VPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYGESFL
HHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKRTIIMMLDSFGVGASADAASFGDVGSDTFGHIAKACAEGKADIGREGPLKLPNLARLG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHC
LGHAAMESTGAFAPGFGDNVELIGAYGHAQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
CCHHHHHHCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILARAGLDGFLGNCHASGTTILEELGEEHMRSGMPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEETFGLDNLYRLCEITREELEPYNIGRVIARPFDGTGPSDFARTGNRKDYSLAPPAKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCCCHHHHHCCCCCCCCCCCCHHHH
LDKLNEAGGEVVSVGKIADIYAYCGITKKVKANGLEALFDATLAEVKSAGDNTIVFTNFV
HHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSHYGHRRDVAGYAKGLEYFDARLPEMLALLGEDDLLILTADHGCDPTWQGTDHTREY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHH
VPVLAFGAGLKAGSLGRRKSFADIGQSIASHFKLEPMAYGESFL
HHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA