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The map label for this gene is yjcD [H]

Identifier: 126175411

GI number: 126175411

Start: 3759500

End: 3760852

Strand: Reverse

Name: yjcD [H]

Synonym: Sbal_3210

Alternate gene names: 126175411

Gene position: 3760852-3759500 (Counterclockwise)

Preceding gene: 126175415

Following gene: 126175407

Centisome position: 73.35

GC content: 48.56

Gene sequence:

>1353_bases
ATGTCTGAGCAATTGAGTTCAACAGCCGTACCCTCTGGTTCGTTTCTGGACCGTTATTTTTCTATTCAACAACGTGGCAG
CACAGTTCGCCAAGAAGTGATTGCGGGATTAACAACTTTCCTCGCTATGGTCTACTCAGTGATTGTGGTGCCAAACATGT
TAGGCCAAGCGGGATTTGATCCCGGCGCCGTATTTATCGCTACCTGTTTAATTGCATCATTTGGTTCTTTGCTCATGGGT
TTATGGGCAAACTTACCTATGGCGATTGGCTGCGCTATTTCGCTCACCGCCTTTACCGCCTTTAGCTTAGTGCTAGGTCA
GGGCATGTCGATTCCGGTTACCTTAGGCGCGATTTTCCTAATGGGCGTGACCTTCACGCTTGTGAGTGTGACGGGTATTC
GTCAGTGGGTGCTGGCTAATTTACCTAAGGGCATTGCCCACGGTACTGGTATAGGTATCGGCTTGTTTTTACTCTTGATT
GCGACTAACAGCGTGCAATTGATTGTGGCCAATAGCGCAGGCTTGCCGGTGAAGTTGGGCGACATTAACAGCTTACCTGT
TATCGCGACTATTCTAGGTTTAGCGGCAACTATCGGTTTAGAGCGCCGTGGTGTACCTGGCGGTATTTTGTTGGTGATTA
TCGCGTTATCGGTATTTGGTTTAGTGTTCGATCCGAGCGTGAAATACCAAGGTTTGTTTGCCTTGCCTAATTTAACCTCA
GAGCATTCACTGATTGGTCAGCTTGATATCATGGGCGCCTTTAATCCTGTGGTATTGCCAATCGTATTAGCGTTAGTGAT
GACGGCAATTTTCGATGCGACCGGCACTATCCGTGCTGTGGCTGGCCAAGCGAATTTGCTCGATAAAGACGACAATATTG
TCGGCGGCGGCAAAGCCTTAACCTCAGACTCAGTCAGCAGCATGGTGGCGGGTTTAGTGGGCGGCGCACCTGCGGCTGTG
TATATCGAGTCGGCGGCGGGTACTGCGGCGGGCGGTAAGACAGGTTTAACTGCGACGATCGTGGGCGTACTGTTTTTATT
GATGATGTTTTTAGCGCCATTAAGCTATTTAGTGCCAGCTTATGCGACAGCACCTGCTTTGATGTACGTGGGTTTGTTAA
TGCTGAGTAACGTGGCAAAACTTGATTTTGACGATAAAGTCGATGCCATGGCAGGCTTAACCTGCGCTGTGTTTATCATC
TTAAGTTGTAATATCGTCACAGGTATTATGCTGGGCTTTGTGACCCTAGTTGTCGGCCGTATCTGTAGCGGAGAATGGCG
CAAACTGAAAGTAGGCGTGCTCGCCATTACCTTAGGTTTAGTGGTGTTTTATATGGGTGGTTGGGCGATTTAA

Upstream 100 bases:

>100_bases
GGATTTGGGGCTCTAATCTGCCGCAGCCAGCGTCGCCAATTGCGTTTTAGGGTAATTGGTACCGACCCCATTTTAAGAGA
TCACAAGGTATAACAACATT

Downstream 100 bases:

>100_bases
GTTAGGCAAACTGAGTGATTTAAACTGAGTTATTGTAAACAGAAGCGAGTGCGTCTTAGGATTAGCACTCGCTTTGATTT
TGTGCCCGGTATTCACAATA

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANSAGLPVKLGDINSLPVIATILGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPNLTS
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMVAGLVGGAPAAV
YIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFDDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI

Sequences:

>Translated_450_residues
MSEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANSAGLPVKLGDINSLPVIATILGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPNLTS
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMVAGLVGGAPAAV
YIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFDDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI
>Mature_449_residues
SEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPGAVFIATCLIASFGSLLMGL
WANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIA
TNSVQLIVANSAGLPVKLGDINSLPVIATILGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPNLTSE
HSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMVAGLVGGAPAAVY
IESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVAKLDFDDKVDAMAGLTCAVFIIL
SCNIVTGIMLGFVTLVVGRICSGEWRKLKVGVLAITLGLVVFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=72.8285077951002, Blast_Score=642, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=450, Percent_Identity=74.2222222222222, Blast_Score=631, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=421, Percent_Identity=40.3800475059382, Blast_Score=291, Evalue=4e-80,
Organism=Escherichia coli, GI1790150, Length=438, Percent_Identity=38.5844748858447, Blast_Score=271, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46324; Mature: 46193

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFIATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANSAGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATILGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPNLTS
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKAL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCC
TSDSVSSMVAGLVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVAKLDFDDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSGEWRKLKVGVLAITLGLVVFYMGGWAI
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFIATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFL
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVTFTLVSVTGIRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANSAGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATILGLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPNLTS
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQLDIMGAFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKAL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCC
TSDSVSSMVAGLVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVAKLDFDDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ICSGEWRKLKVGVLAITLGLVVFYMGGWAI
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]