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The map label for this gene is yciR [C]

Identifier: 126175397

GI number: 126175397

Start: 3741514

End: 3743007

Strand: Reverse

Name: yciR [C]

Synonym: Sbal_3196

Alternate gene names: 126175397

Gene position: 3743007-3741514 (Counterclockwise)

Preceding gene: 126175398

Following gene: 126175395

Centisome position: 73.0

GC content: 44.44

Gene sequence:

>1494_bases
ATGTTCGAAATCGGGTTAGTTGTTGCTTCTCTCATTTTATTGATATTTTCATTATACATACTGCAGGCAAAATATAGATC
GCAACGGTCACAGCAAAAATTCTTAGCACAGCTTTGTCTCCAGCTAGAGCAACAAAAGATTGAACGCCAAGCATTAGACC
TTGGCACGGTTCCCCAAGAGTTTGCGCCTCTCTACCATACCTTAGATGAATTATTGAAGGCCTTACCCGCAAGCGCAGGT
AAAGATAAGTTGACTGGACTAGTGAACCGTGTAGGCCTTAAACGTGCGCTGACCTCCATGATGCCGCTGACTCAAGGGAC
ATTAGTGCTGATTGATATTTATCGATTTCGCTATGTGAATGATCTCTTTGGGTTTGTATTTGGCGATATCCTGCTAAAGC
AATTTGCGGAACGGTTAAACAGCTTAAGTTTATCCCCAAGGTTAATCGCACGGCTCAATGGTGATGAATTTTGCCTATAT
TACGAGCAAGCGTTGACTGAGGAGCAACTCATTCATTTAAGAGGCCGTTTACAGGTGCCTTTTAGCATTAAGAACACGCC
AGTCAGCGTTAAACTTCAAATCGGTTGTGTGCATTTACAAGAACACCACGCCGACACGAGTCAGATGTTACGTCGCGTCG
ATTTGGCGCTGAAGAAAGCCCGTCACTCTCGTAGCGCGATTGCTTACTATGCCGAGAATGATGATATTCAACAGTTAAGA
GAACTGAGAATTATCGATAGCTTGCCTAAAGGTTTGCAACGCAATCAAGTCTATATGGTGTATCAAGCGAAACAGGATAT
TGCGACGGGAAGGTGTTTTCAGGTTGAAGCCTTGATGCGCTGGGAACACGACGAACTTGGGGTTATTTCTCCTGGTGAGT
TTATCCCTTTAGCCGAATATGCCGGCATGATTGATTTAGTGAGCCAATGGGCACTCGATCAGGTTTTAGCACAGCAAGCA
AAATGGCGTGCGGCAGGGATACAATTGTGCGTCGCAGTCAACCTATCAACACGGGATCTTGACAGTGAAACCTTGCCCCA
AGAAATTGCGGCGAGATTGGCGCATTACAAACTTCCGCCAGAATCCTTAATGATTGAAATTACTGAAAGTACCTTAATGG
CGGATTTAACTAAGGCGGTCGAAACCTTAGATAAAATTCGTGCGTTAGGGGTGAGGCTCGCAATTGATGATTTTGGTACC
GGTCATTCTTCACTGGCTTACTTGAAGCATCTACCCGTCAATGAAGTCAAAATCGATAAAGCCTTTTTAAAGGATCTTGA
GCAGGATAAACCGTCGGAATATATCCTCGAAGCCAGTATTAATATTGCTAAAAAACTCGGTTATGAGGTGACTGTCGAAG
GAATTGAAACCCCTGAAATCAGAGAGATACTCGTCGATATGGGCGTCGATACCCTACAAGGTATGTATTATGCTAAGCCC
ATGAGAGCTGCAGAACTGGAAATGAACTGGGCCCGGCTGCATAACGCCATGTAA

Upstream 100 bases:

>100_bases
CCAATAATCGTTAGGCCTAAATGGAACTCAAATGGCACGTGAACACTGAATTGCAGTGTCATTTGATAATAAGCTTACGC
GGTAAAGCAGAGGCCAAGGT

Downstream 100 bases:

>100_bases
ACCCAATGCTCATTAACCCACGGTCACTAAGGCTGCTCAACAGAGCCTTAGTGTATTGCTAACTCACCTTTTCAAGTTGC
CGTTGTTTGAAGTGGTTTTG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRALTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLNSLSLSPRLIARLNGDEFCLY
YEQALTEEQLIHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQA
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM

Sequences:

>Translated_497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRALTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLNSLSLSPRLIARLNGDEFCLY
YEQALTEEQLIHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQA
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM
>Mature_497_residues
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQEFAPLYHTLDELLKALPASAG
KDKLTGLVNRVGLKRALTSMMPLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQFAERLNSLSLSPRLIARLNGDEFCLY
YEQALTEEQLIHLRGRLQVPFSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWALDQVLAQQA
KWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGT
GHSSLAYLKHLPVNEVKIDKAFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKP
MRAAELEMNWARLHNAM

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=30.4038004750594, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI87081921, Length=419, Percent_Identity=29.8329355608592, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=35.3909465020576, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=27.7511961722488, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=260, Percent_Identity=32.6923076923077, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=30.2040816326531, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=31.4893617021277, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=29.7071129707113, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=30.7053941908714, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=30.4721030042918, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787055, Length=490, Percent_Identity=22.4489795918367, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=216, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=423, Percent_Identity=23.6406619385343, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=28.2894736842105, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081977, Length=217, Percent_Identity=29.9539170506912, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56369; Mature: 56369

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
FAPLYHTLDELLKALPASAGKDKLTGLVNRVGLKRALTSMMPLTQGTLVLIDIYRFRYVN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
DLFGFVFGDILLKQFAERLNSLSLSPRLIARLNGDEFCLYYEQALTEEQLIHLRGRLQVP
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEHHHHCCHHHHHHHCCCEEEC
FSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
EEECCCCEEEEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEY
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHH
AGMIDLVSQWALDQVLAQQAKWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPP
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDK
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHHH
AFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCHHHHCCHHHHCC
MRAAELEMNWARLHNAM
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFEIGLVVASLILLIFSLYILQAKYRSQRSQQKFLAQLCLQLEQQKIERQALDLGTVPQE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
FAPLYHTLDELLKALPASAGKDKLTGLVNRVGLKRALTSMMPLTQGTLVLIDIYRFRYVN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
DLFGFVFGDILLKQFAERLNSLSLSPRLIARLNGDEFCLYYEQALTEEQLIHLRGRLQVP
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEHHHHCCHHHHHHHCCCEEEC
FSIKNTPVSVKLQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLR
EEECCCCEEEEEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
ELRIIDSLPKGLQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEY
HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCHHHH
AGMIDLVSQWALDQVLAQQAKWRAAGIQLCVAVNLSTRDLDSETLPQEIAARLAHYKLPP
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
ESLMIEITESTLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDK
HHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCHHHHHH
AFLKDLEQDKPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKP
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCHHHHCCHHHHCC
MRAAELEMNWARLHNAM
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]