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The map label for this gene is yddU [C]

Identifier: 126175380

GI number: 126175380

Start: 3721212

End: 3723518

Strand: Reverse

Name: yddU [C]

Synonym: Sbal_3179

Alternate gene names: 126175380

Gene position: 3723518-3721212 (Counterclockwise)

Preceding gene: 126175381

Following gene: 126175379

Centisome position: 72.62

GC content: 47.68

Gene sequence:

>2307_bases
ATGCTAAATAGTTTTCGCGCACGGCTGATTTTAGTTTTCTTTATTGTGCTGACTCTAGTGCAGTTTGCCACGGCATTTTC
CGTATTGACGGCGACCGAAAGGGACAACTTTTTACAACAACAAAAAAGTTTAGATATTGGTGCCAATGTGTTTCTCGAAG
TCCTTTCGAATCGCGGTATTCAGCTCAGCCAAAGTTTGTCCGTGCTCAGTGCCGATTTTGGTTTTAAGCGCGCGATTGCC
ACCGGCGAGCAAGAAACCATTGAGTCAGTGTTATCCAATCACGGCTCTCGTATCGGCGCCGACGCTGCTGTGTTGTTGTC
TCCAAAAGGGGAGCTGTTGACCTCGAGTCTACCCGGACTCACTCAGGATGACATTCAATCCTTATTCGATATGACCACCA
GCAATAACAATGCTTTAGCTATCCTTAATTTTGATCATGCCAGCTATCAGTTTATGTTGCAGCCCGTGAAGGCGCCGACC
TTGATTGCTTGGGTCGGAATGGGGTTCCTATTGGATGAGAAAGTCGCCCAACAAGCTAAAGCCATTACCGGTATCGATGT
CAGCTTTGTCAATCAAGCCACGGGGCGCACCGAAATCGCGTCAACCTTATCCGATGATGAAAAACGCAGTGTGGTAGAGC
AGGCGAGCCTATTCCCCAGCCTACTGAAAATGCCCAGTGAGAACATTCCCGTGGATTATCTATCCATGGCGATCAAACTT
TATGATCATAACGGCAGCCAATTAGCCCTGTTGCATCAGTCAAACCTCAAATGGCAGCAAAGTTATCAGCATCTACGCAA
TAATATGTTGCTGATTTTTGCCTTGACCTTAGCGCTGGCGATTGTGATTGCGATTTGGTTGTCGGGCAGTTTGACTGAAC
CCGTGCATCAACTGGTGACCTATGCCCGTAAAATTGGTCAAGGTAAGCAGCCTGGCAGTATTCAAGGTGCGCCAGCAGAA
CTGCGGGTGTTGGCTAAAAGTTTGTCCTTGATGCGCGACGATATTGAAGCGCGGGAAAAGGATTTAGTCTATCAATCCCG
CCACGACAGTTTGACGGGATTGCTCAATCGTTTTGCGGCAAAACAGCATTTAGCGGATCTTAAACATGAGCTAGCAGGCG
CTATGGTATTGCTGGATATTAAACATTTTCGCCATATCAACGACATTATCGGTTTTGCTAACGCCGATACCTTATTGGTG
CTTTTTGCCCGCCGTTTAGAGCAATTAGCCCCCACTCCAGATTTACTCGCGCGATTAGACGGCGACTCATTTTTACTCCT
GTATAGCCAAGGTATTCGTCCCGAGCACTTGCTGAAATCATTGGATATGTTGGAGTCGCCATTTCCAATCCAAGGCTCAA
ATATTTCTCTTACCGTGCGGGCGGGATTACTGGAAATCGATGGCAATGGTGCCGATATCGATGTGTTAGTGCGCCGCGCC
GAAATCGCCCTCAATCAAGCCTGTCTCGAAGAACAACGCATCGTCAGTTATCGTCAGGGCGCCGATGAGAAATACCAGCG
TGAGCTGACGATTATCCGCGATTTGCCCATAGGCTTGGCGCAAAACCAACTCTATCTCGTGTTTCAACCTAAGGTGGATT
TACACTTAAATCAGTGTACTGGCGCCGAGGCACTGATCCGCTGGCAGCATCCAACCTTAGGGTTTATTCCGCCCGATGAG
TTTATCCAACTCGCTGAAAACTCAGGTAACATTGATATCGTCAGCCAATGGGTGTTGCAGCAGGCGATTCAACAATTAGT
CGCATGGCAGCAGCGGGGGATGGCGCTGAAACTGGCCATTAACCTGTCGGCCCATGATTTAGTCGATACCCGCTTGCCGA
ATCAAATTGCCAGTTTATTAAAAGACAATAATCTGCCAAGTGGCGCACTCTGCATCGAAGTCACCGAAGGCGCTGTGATG
AAAGATGCACAGACAGTGGTGAGTGTGTTGCAGCGATTCCGTGACATGGGCGTGTCGGTCGCCATCGATGACTTTGGCAC
AGGGCATTCATCCTTAGCATATTTGAAAATTTTGCCGGTCAATGAAGTGAAGATTGATCGTAGTTTTATCAAAGACATGC
TCACGAATAGCCAAGATGTGATGATAGTGAACACAAGCATTCAGTTGATCCACGGCCTAGGTTTTACCGTTGTGGCCGAA
GGGGTTGAGGAACCAGAAGGTGTTGACATCCTGCGTAACCTCAATTGCGACATCATCCAAGGTTACGTGTTTTCAAAACC
CTTAAAAGCGGCTGAATTTGATCTGTGGTTTGAAGCGTTTAACCATAAAAATTCCTCTGACGCATAA

Upstream 100 bases:

>100_bases
GCGAATCAACTCAGTTTGTCCTTAGACATTGAACGCCAAGCTAAACCGTCAGCCCCGCCGTCGGGATTTGGCCACTACGA
TGCTCAAGGCAAGCCATTAC

Downstream 100 bases:

>100_bases
GTTAATTTGCCCAATAAAGCGCACAAAAGACGTTAGACTTAGGCGTCTTCGAAAGAATAAAGCGGAGTAGCGTGTGAACA
TTGCCATGAATGCATTGAAG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADFGFKRAIA
TGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFMLQPVKAPT
LIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKL
YDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGSIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKHELAGAMVLLDIKHFRHINDIIGFANADTLLV
LFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRA
EIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRGMALKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVM
KDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAE
GVEEPEGVDILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHKNSSDA

Sequences:

>Translated_768_residues
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADFGFKRAIA
TGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFMLQPVKAPT
LIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKL
YDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGSIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKHELAGAMVLLDIKHFRHINDIIGFANADTLLV
LFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRA
EIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRGMALKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVM
KDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAE
GVEEPEGVDILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHKNSSDA
>Mature_768_residues
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGIQLSQSLSVLSADFGFKRAIA
TGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGLTQDDIQSLFDMTTSNNNALAILNFDHASYQFMLQPVKAPT
LIAWVGMGFLLDEKVAQQAKAITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKL
YDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVTYARKIGQGKQPGSIQGAPAE
LRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAAKQHLADLKHELAGAMVLLDIKHFRHINDIIGFANADTLLV
LFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRA
EIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRGMALKLAINLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVM
KDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAE
GVEEPEGVDILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHKNSSDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=32.7058823529412, Blast_Score=210, Evalue=3e-55,
Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=30.0230946882217, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=35.5731225296443, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI226510982, Length=388, Percent_Identity=27.0618556701031, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.5301204819277, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=30.4347826086957, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1786507, Length=259, Percent_Identity=28.957528957529, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=30.078125, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=254, Percent_Identity=31.8897637795276, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081845, Length=222, Percent_Identity=31.981981981982, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI87081743, Length=231, Percent_Identity=29.004329004329, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=363, Percent_Identity=24.7933884297521, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI87081881, Length=209, Percent_Identity=28.7081339712919, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 84925; Mature: 84925

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QLSQSLSVLSADFGFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGL
EEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCC
TQDDIQSLFDMTTSNNNALAILNFDHASYQFMLQPVKAPTLIAWVGMGFLLDEKVAQQAK
CHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKL
HHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEE
YDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVT
EECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YARKIGQGKQPGSIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQHLADLKHELAGAMVLLDIKHFRHINDIIGFANADTLLVLFARRLEQLAPTPDLLARLD
HHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCC
GDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRA
CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCEEECCCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRGMALKLAI
CCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
NLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSV
ECCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAE
EEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHCC
GVEEPEGVDILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHKNSSDA
CCCCCCCHHHHHCCCCCEEECHHHCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNSFRARLILVFFIVLTLVQFATAFSVLTATERDNFLQQQKSLDIGANVFLEVLSNRGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
QLSQSLSVLSADFGFKRAIATGEQETIESVLSNHGSRIGADAAVLLSPKGELLTSSLPGL
EEHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCCC
TQDDIQSLFDMTTSNNNALAILNFDHASYQFMLQPVKAPTLIAWVGMGFLLDEKVAQQAK
CHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQATGRTEIASTLSDDEKRSVVEQASLFPSLLKMPSENIPVDYLSMAIKL
HHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEE
YDHNGSQLALLHQSNLKWQQSYQHLRNNMLLIFALTLALAIVIAIWLSGSLTEPVHQLVT
EECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YARKIGQGKQPGSIQGAPAELRVLAKSLSLMRDDIEAREKDLVYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQHLADLKHELAGAMVLLDIKHFRHINDIIGFANADTLLVLFARRLEQLAPTPDLLARLD
HHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCC
GDSFLLLYSQGIRPEHLLKSLDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRA
CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLEEQRIVSYRQGADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCEEECCCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRGMALKLAI
CCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
NLSAHDLVDTRLPNQIASLLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSV
ECCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKILPVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAE
EEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCHHHHCC
GVEEPEGVDILRNLNCDIIQGYVFSKPLKAAEFDLWFEAFNHKNSSDA
CCCCCCCHHHHHCCCCCEEECHHHCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]