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The map label for this gene is hlyB [H]

Identifier: 126175268

GI number: 126175268

Start: 3587024

End: 3588643

Strand: Direct

Name: hlyB [H]

Synonym: Sbal_3067

Alternate gene names: 126175268

Gene position: 3587024-3588643 (Clockwise)

Preceding gene: 126175267

Following gene: 126175270

Centisome position: 69.96

GC content: 44.57

Gene sequence:

>1620_bases
ATGAATTTCTTTAATAACATTTCTATTTTTAAAAAAGTTATCGCGATATTTATTTTAGCAGTCATCATTTTCGCTTTAAA
CTTAAGCATTAGTGTTATCTCCATAAATAAAAATCGCACCACTCTTAACTATATGGAGCAGCAAGTTTACCAAAGGGTTG
AACTCGCCAATCAAAACGTGTTTTTTATCCAACGACTCGATGAGCTTTATACTCAATCCGTTTCTTTTGCCGACGAAGAC
CTGTTAACCAATGCAGGTACTATGTACGAATCTTTACGCAAAAACCTCCAACAGTTAGACAACGTCGATCCCTCACAAGC
CAATCAACTCAACAATCTATCTGCTAAATTAACCCGTTATAACGACATTACAATTAAGCTGGCTAAAGGCATGCTGGCAG
GTACGATTGATATGGCAAATATTGGCCAAATCAGCCAAGAAAAATCCCAAGCCTATGAAGCAGTGCTCAATGAAATACAA
AACTACAAACAAGAAAAAGTACTCGAATTTAAACAATCAATAAAAGAAGCGGGCGACAGATCGGAGCAAAGTTTATGGCT
CACCCTCTCCATCGGTATCGCTTTGCTGATCGTGATGTTTATTGTCACTATCGCCATTGCACGCGCCATTAGCTCTTCCG
CCCGTAATGTTGCCCAGTCATTAAGTGAGCTCGCCGATGGTAAGGGTGATCTTAGCCATAAACTTAACGTGTCTGGTAGT
GATGAGCTCGGCCAAGTATCGAGTAACTTCAATCGATTCCTTGGCTTACTCGGTGATTCGATTCGCAGGGTGGTGAATGT
TACCGATCCCTTGCTTGCAAGCTCGCACTCACTCAAACAGCGAATGGAAGATGCGACGCATGCAACTCAGAGACAAAGCC
ATGATGCCAGTGCTGTGCAAGTTTCAATGGAAGACATGCGCCACTCCGTCATTGAAATTTCGCAAAATGCGCGCCAAGCC
GCCAGTGCCGCCCAGATTGCCGAAAAAGAAGCCATGCAAGGTATGACAGTCGTCCAACGTACTATCGATATTTCACAGGA
ATTAAATACGGGGATTCAGGCCGCTTCTAACTCGATTAATGAACTTGCCAGAGACACTGAAAATGTCACCTCTATCTTAA
ATGTGATTACCTCGATTGCTGAGCAAACTAACCTGTTGGCACTGAACGCCGCCATCGAAGCTGCCCGCGCGGGTGAGCAA
GGACGGGGCTTTGCCGTGGTAGCGGATGAAGTCCGTGCCCTCGCCTCTAAAACCGCAGATGCAACCACAGAAATTCGTCA
TGTGTTACAAAACCTTAAAACGGCGGCCATTTCTTCGGTCAGTACCATGAATGTGGCCATGTCGAAATCATCGGAAAATG
AAACCAATGCCCAAAACACAGGCAGCGCATTAAAATCGATTCAGCAGCAGATTGTCAGTATCAATAGCATGAACACCCAC
ATCGCCTCGGCAACGGAAGAGCAAGCCTCAGTCGCTTCTCAAGTGGTCGATAATGTCGTCAACATGAACGCTTCATTCGA
ACAGACATTGCAAATTCTGTCGCAGGTTCGCAATGTTTCCGAAGGGCTAGTTGATTTTGCCGATGAACTGAAAAACGCCA
CCTCACAATTCAAACTTTGA

Upstream 100 bases:

>100_bases
GCTATATTGATAGTAGTGAGGCCAATGATTCGGTAAAAGTTATTGCCGAGTTTTAGATTGGAGTGCCGAGCTTTAGCTCG
GCACAACTTGGGGGCAAGGG

Downstream 100 bases:

>100_bases
CCATTGTTTGAGATGATTGCATGAGCTGATTGTGTGAGATAGTTTTCCTCCACAAAAAATCGGTATTGAGTAACTCAATA
CCGATTTTTTTATGCATCAA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MNFFNNISIFKKVIAIFILAVIIFALNLSISVISINKNRTTLNYMEQQVYQRVELANQNVFFIQRLDELYTQSVSFADED
LLTNAGTMYESLRKNLQQLDNVDPSQANQLNNLSAKLTRYNDITIKLAKGMLAGTIDMANIGQISQEKSQAYEAVLNEIQ
NYKQEKVLEFKQSIKEAGDRSEQSLWLTLSIGIALLIVMFIVTIAIARAISSSARNVAQSLSELADGKGDLSHKLNVSGS
DELGQVSSNFNRFLGLLGDSIRRVVNVTDPLLASSHSLKQRMEDATHATQRQSHDASAVQVSMEDMRHSVIEISQNARQA
ASAAQIAEKEAMQGMTVVQRTIDISQELNTGIQAASNSINELARDTENVTSILNVITSIAEQTNLLALNAAIEAARAGEQ
GRGFAVVADEVRALASKTADATTEIRHVLQNLKTAAISSVSTMNVAMSKSSENETNAQNTGSALKSIQQQIVSINSMNTH
IASATEEQASVASQVVDNVVNMNASFEQTLQILSQVRNVSEGLVDFADELKNATSQFKL

Sequences:

>Translated_539_residues
MNFFNNISIFKKVIAIFILAVIIFALNLSISVISINKNRTTLNYMEQQVYQRVELANQNVFFIQRLDELYTQSVSFADED
LLTNAGTMYESLRKNLQQLDNVDPSQANQLNNLSAKLTRYNDITIKLAKGMLAGTIDMANIGQISQEKSQAYEAVLNEIQ
NYKQEKVLEFKQSIKEAGDRSEQSLWLTLSIGIALLIVMFIVTIAIARAISSSARNVAQSLSELADGKGDLSHKLNVSGS
DELGQVSSNFNRFLGLLGDSIRRVVNVTDPLLASSHSLKQRMEDATHATQRQSHDASAVQVSMEDMRHSVIEISQNARQA
ASAAQIAEKEAMQGMTVVQRTIDISQELNTGIQAASNSINELARDTENVTSILNVITSIAEQTNLLALNAAIEAARAGEQ
GRGFAVVADEVRALASKTADATTEIRHVLQNLKTAAISSVSTMNVAMSKSSENETNAQNTGSALKSIQQQIVSINSMNTH
IASATEEQASVASQVVDNVVNMNASFEQTLQILSQVRNVSEGLVDFADELKNATSQFKL
>Mature_539_residues
MNFFNNISIFKKVIAIFILAVIIFALNLSISVISINKNRTTLNYMEQQVYQRVELANQNVFFIQRLDELYTQSVSFADED
LLTNAGTMYESLRKNLQQLDNVDPSQANQLNNLSAKLTRYNDITIKLAKGMLAGTIDMANIGQISQEKSQAYEAVLNEIQ
NYKQEKVLEFKQSIKEAGDRSEQSLWLTLSIGIALLIVMFIVTIAIARAISSSARNVAQSLSELADGKGDLSHKLNVSGS
DELGQVSSNFNRFLGLLGDSIRRVVNVTDPLLASSHSLKQRMEDATHATQRQSHDASAVQVSMEDMRHSVIEISQNARQA
ASAAQIAEKEAMQGMTVVQRTIDISQELNTGIQAASNSINELARDTENVTSILNVITSIAEQTNLLALNAAIEAARAGEQ
GRGFAVVADEVRALASKTADATTEIRHVLQNLKTAAISSVSTMNVAMSKSSENETNAQNTGSALKSIQQQIVSINSMNTH
IASATEEQASVASQVVDNVVNMNASFEQTLQILSQVRNVSEGLVDFADELKNATSQFKL

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=321, Percent_Identity=30.2180685358255, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=32.0422535211268, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788194, Length=379, Percent_Identity=26.6490765171504, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787690, Length=346, Percent_Identity=28.6127167630058, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789453, Length=361, Percent_Identity=28.2548476454294, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 58854; Mature: 58854

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFNNISIFKKVIAIFILAVIIFALNLSISVISINKNRTTLNYMEQQVYQRVELANQNV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
FFIQRLDELYTQSVSFADEDLLTNAGTMYESLRKNLQQLDNVDPSQANQLNNLSAKLTRY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
NDITIKLAKGMLAGTIDMANIGQISQEKSQAYEAVLNEIQNYKQEKVLEFKQSIKEAGDR
CCEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEQSLWLTLSIGIALLIVMFIVTIAIARAISSSARNVAQSLSELADGKGDLSHKLNVSGS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCC
DELGQVSSNFNRFLGLLGDSIRRVVNVTDPLLASSHSLKQRMEDATHATQRQSHDASAVQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHH
VSMEDMRHSVIEISQNARQAASAAQIAEKEAMQGMTVVQRTIDISQELNTGIQAASNSIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELARDTENVTSILNVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCH
ATTEIRHVLQNLKTAAISSVSTMNVAMSKSSENETNAQNTGSALKSIQQQIVSINSMNTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
IASATEEQASVASQVVDNVVNMNASFEQTLQILSQVRNVSEGLVDFADELKNATSQFKL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNFFNNISIFKKVIAIFILAVIIFALNLSISVISINKNRTTLNYMEQQVYQRVELANQNV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCH
FFIQRLDELYTQSVSFADEDLLTNAGTMYESLRKNLQQLDNVDPSQANQLNNLSAKLTRY
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
NDITIKLAKGMLAGTIDMANIGQISQEKSQAYEAVLNEIQNYKQEKVLEFKQSIKEAGDR
CCEEHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SEQSLWLTLSIGIALLIVMFIVTIAIARAISSSARNVAQSLSELADGKGDLSHKLNVSGS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCC
DELGQVSSNFNRFLGLLGDSIRRVVNVTDPLLASSHSLKQRMEDATHATQRQSHDASAVQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHH
VSMEDMRHSVIEISQNARQAASAAQIAEKEAMQGMTVVQRTIDISQELNTGIQAASNSIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELARDTENVTSILNVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCH
ATTEIRHVLQNLKTAAISSVSTMNVAMSKSSENETNAQNTGSALKSIQQQIVSINSMNTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
IASATEEQASVASQVVDNVVNMNASFEQTLQILSQVRNVSEGLVDFADELKNATSQFKL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]