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The map label for this gene is yggW [H]

Identifier: 126175233

GI number: 126175233

Start: 3553720

End: 3554886

Strand: Direct

Name: yggW [H]

Synonym: Sbal_3031

Alternate gene names: 126175233

Gene position: 3553720-3554886 (Clockwise)

Preceding gene: 126175232

Following gene: 126175234

Centisome position: 69.31

GC content: 47.3

Gene sequence:

>1167_bases
ATGTCGTCAACAGCCATGACTACTGCGATGAAGCTCGAACTGCCGCCACTCAGTCTGTATATCCATATTCCCTGGTGCGT
ACAAAAGTGTCCTTATTGTGACTTTAATTCCCATGGCCAAAATGGTGAGCTGCCACAGGAAGCCTATGTTGATGCGCTAT
TGGAAGACTTACGCCAAGATTTACATCTCGTCCAAGGGCGGCAAATTCATACCATCTTTATCGGTGGCGGCACACCATCC
TTATTCGATGCTTTGCAAATCAAACGCATACTCGATGGTGCCAATGCGCTAATCCCCTTTAGTGACAATATCGAAATCAC
CATGGAAGCCAACCCCGGCACTTTAGAACACGATGACTTTAGTGCCTATCGTGCAGCCGGTGTCACCCGTTTATCTATCG
GGGTGCAGAGTTTTTCTAAGGATAAGCTCAACTTACTTGGACGTATTCACGATCAAAACGAGGCACAAGTCGCTGCTCAA
AAAGCCAGCCAAGCGGGATACTTGAGTTTTAACCTCGATTTAATGCATGGATTACCCAACCAAAGTTTTGCTGAAGCGAT
GGCCGATATCGACACGGCAGCGGCGCTCAATCCGCCCCACCTGTCTTGGTATCAGTTAACCATTGAGCCCAACACCCTAT
TCCACTCAAAACCGCCGCAGTTGCCCGATGACGAAGCGCTCTGGCATATCTATGAGCAAGGTCAACAAAAGCTGGCCGCA
TTAGGGTATGAGCAATACGAAATATCCGCTTATGCGAAACCCGGTTACCAATGTAAGCACAATCTCAACTACTGGCAGTT
TGGTGATTATCTAGGCATAGGCTGTGGCGCCCACGGTAAAGTGACGCTGCCAGAAGAAAACCGCATTATACGCACGATAA
AAATTAAACATCCCAAGGGATATCTGAGTGCCAGCAACTACACCTTCGAATCGATTGATGTGGCAGAGGAAGATCGCGCG
CTTGAATATTTAATGAATCGCCTGCGCCTGATGACAGCTATCCCTAAGCAAGAATTTGAACTGCGTACCGGACAGCACAG
AGACACATTGACCGAAGGAATGGAAAAGGCCAAACAACGCGGTTTACTCACAGAATCCGCTGAACATTGGCAATTAACCA
GCAAAGGTCACATGTTTGTTAATGATTTACTGACACAATTCTGCTAA

Upstream 100 bases:

>100_bases
GCAACGAGAAAAATGCTTTAAGCCATCGTGGTAAAGCCCTAGTGCAACTCATCGCCGCCATGCAAGCCCAAGGCGTGTTA
ACTGGCGGGAATGCACAATA

Downstream 100 bases:

>100_bases
CACTGCCGTTAAAATAGCTATATAAATAATGTGTTAGTGGTAAATAGTGCAGTTTAATACTATTACTGCTAACACATTTT
ATAACATTAATATCCATACA

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSSTAMTTAMKLELPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQDLHLVQGRQIHTIFIGGGTPS
LFDALQIKRILDGANALIPFSDNIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQVAAQ
KASQAGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEALWHIYEQGQQKLAA
LGYEQYEISAYAKPGYQCKHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTIKIKHPKGYLSASNYTFESIDVAEEDRA
LEYLMNRLRLMTAIPKQEFELRTGQHRDTLTEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC

Sequences:

>Translated_388_residues
MSSTAMTTAMKLELPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQDLHLVQGRQIHTIFIGGGTPS
LFDALQIKRILDGANALIPFSDNIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQVAAQ
KASQAGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEALWHIYEQGQQKLAA
LGYEQYEISAYAKPGYQCKHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTIKIKHPKGYLSASNYTFESIDVAEEDRA
LEYLMNRLRLMTAIPKQEFELRTGQHRDTLTEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC
>Mature_387_residues
SSTAMTTAMKLELPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQDLHLVQGRQIHTIFIGGGTPSL
FDALQIKRILDGANALIPFSDNIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQVAAQK
ASQAGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEALWHIYEQGQQKLAAL
GYEQYEISAYAKPGYQCKHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTIKIKHPKGYLSASNYTFESIDVAEEDRAL
EYLMNRLRLMTAIPKQEFELRTGQHRDTLTEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=267, Percent_Identity=34.0823970037453, Blast_Score=163, Evalue=2e-40,
Organism=Escherichia coli, GI1789325, Length=376, Percent_Identity=59.5744680851064, Blast_Score=473, Evalue=1e-135,
Organism=Escherichia coli, GI87082341, Length=243, Percent_Identity=31.2757201646091, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43682; Mature: 43551

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTAMTTAMKLELPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQD
CCCCCEEEEEEEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LHLVQGRQIHTIFIGGGTPSLFDALQIKRILDGANALIPFSDNIEITMEANPGTLEHDDF
HHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCC
SAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQVAAQKASQAGYLSFNLDLMHGLPN
HHHHHCCEEEEEECHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCC
QSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEALWHIYEQGQQKLAA
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
LGYEQYEISAYAKPGYQCKHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTIKIKHPKG
CCCCEEEEEEECCCCCCCCCCCCEEECCCEEEECCCCCCEEECCCCCCEEEEEEEECCCC
YLSASNYTFESIDVAEEDRALEYLMNRLRLMTAIPKQEFELRTGQHRDTLTEGMEKAKQR
CEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHC
GLLTESAEHWQLTSKGHMFVNDLLTQFC
CCCCCCCCCEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SSTAMTTAMKLELPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQEAYVDALLEDLRQD
CCCCEEEEEEEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LHLVQGRQIHTIFIGGGTPSLFDALQIKRILDGANALIPFSDNIEITMEANPGTLEHDDF
HHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCC
SAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQVAAQKASQAGYLSFNLDLMHGLPN
HHHHHCCEEEEEECHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCC
QSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEALWHIYEQGQQKLAA
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
LGYEQYEISAYAKPGYQCKHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTIKIKHPKG
CCCCEEEEEEECCCCCCCCCCCCEEECCCEEEECCCCCCEEECCCCCCEEEEEEEECCCC
YLSASNYTFESIDVAEEDRALEYLMNRLRLMTAIPKQEFELRTGQHRDTLTEGMEKAKQR
CEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHC
GLLTESAEHWQLTSKGHMFVNDLLTQFC
CCCCCCCCCEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]