| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126175167
Identifier: 126175167
GI number: 126175167
Start: 3479160
End: 3480866
Strand: Direct
Name: 126175167
Synonym: Sbal_2965
Alternate gene names: NA
Gene position: 3479160-3480866 (Clockwise)
Preceding gene: 126175166
Following gene: 126175170
Centisome position: 67.85
GC content: 42.36
Gene sequence:
>1707_bases ATGTCTAAAGCCCTTGCAATTGTTGGTGCTCGCCTTAACTCTAGTCGTCTCGCAGGCAAACACTTATTAGAGCTCGCAGG GAAGCCGCTTATTGAACAGTTATGGCGCCGCCTAACATTGTGCCAAGAGGTTAATAGTTTTGAACTGGCGACCACTGCTG ATGATTTTAATAAACCTCTCATTAATTGGGCACATGCCCACCAAATTTGTTGCCATCCTTTTGAAGGAGATGTTAACGAT CTAATGGCACGACTCGATAACATTATCCAAAGACAAGCACCTGACTTTATTATCTATATTTGCGGTGATTGCCCACTCAT TGCTCCTGATTTTATCGATTATGCCCTGACAAGGCTTAAGGCTTCGGGCAAAGACAGCATCAAACTCCATGATGGAGTCA TCTCTATTCACGAAGGCATGGCATTTTACAGTCGCAAAGGATGGGGAAAACTGATGTCTGTAAGCCAATGTGCCATGTCG AGGGAGCACGTGGGCTACGCGGATAGAATCACCCCAGTGCTTGACTACTTAAGTATTCCCGATAGCGCAAATTATTCGCA GATAAAACACCGAATATCAGTAGATACCCAAGCAGACTATCGCTTTATGGAAGAAGTGTATCGCCGTTGGTACAAGATCC ATACTGTAGACACCATCGTCAGCCTAGTATGGGTGCAACAACAGTTATTAGAAGATCCAATGCTAGCGGCTATCAACAAT CATGTGAAACAAAAAGCGGCAAATAAACTTTACGCAAAGGCCAGTATCTATTGCCATCTAGGACCCTCTATTGGCTTGGG ACATTACAAGCGGTCCAAATTGATTGCCGATGCATTGCAAGAGTATCTTGGAATTGGGGCCATAGTACACGTCCAATATG AAGGACCGCAGCTTGAAAAAACATCACCCCGACTTCACTGGTATAAGAATGAAAATGAGTTGCTGAAAGCCATGATTTTG GATCCAAATCCACTCATTGTACTTGATCTACATCCAGACTTTATTTCACTACCAGCACTTAGAAAGACACTCCAGCCACT CGGAGATAAAAACACAAAAATTGTAGGAATAGATAAACTCATATCAATAATCGATGAGCTAGATTGGTTATTTATCCCTA GCTTCAATAATTCATTTCAGCATCCTAAGGTCTCTGTCGGCTGGCAAAACTATCTATTTCCTTCAATGCTACAACAAACA AAGAAACACCAAATTCTTGTATTGACAGGTGGCAGTGATGCACTCGATTACGGCACCATTTTACCCACGCTACTATCAAA ACTTTGTACTGATTGGCCTATTATTTGGGTACAAGGGCCACTGGCTCCCCCCCCCTTATTGCCATTAAGCTCCACAATAA GTGTACTGACAGATCCCGATGATCTTCATGAGTTAATCGCAGAGTCAGAAATCATTTTAACTTGCTATGGCTTGTCACTA TTCGAATCCATCTTCTCAAGTGCTGCTAGCATATTACTCCCGACACAACATTTGTGTGATAGCGTAGAACTCGAATTGCT TATCAAAGAGCACTGCTGCCTTACGAGTAGTTCCCTTCCTGATGCGATCTCAAAACTTGAAGCTTTATTGAGTGATTGTA ACGCAAGACAAAAACTACAAAAAGAAGCAAGCAGAGTATTTAACGACCACGCTGGTATGATAAATCTAATGGAAGATATT CAACGGCTATTGGAACAAAGTGTCTAG
Upstream 100 bases:
>100_bases CGTCTGTGGTTTTCCCTTGCTGAAGCTGATGAAACCCTAAAATCTGGGGGGCATTTGCTCAACTTTGCACTCTGTATCAC CCCAACCATGAGACCTTGTC
Downstream 100 bases:
>100_bases AACCATCAAAAGTTTAAGTAAATAGATGCTACTCGCTAGCCAGAGGCTGCCGAAATGGTACTTGGCTAGCATAGATTAAC TTATGCAAGTAAAAAGCGTA
Product: acylneuraminate cytidylyltransferase
Products: NA
Alternate protein names: Spore Coat Polysaccharide Biosynthesis Protein F; Spore Coat Polysaccharide Biosynthesis Protein FlmC; Aminotransferase; Cytidylyltransferase; 3-Deoxy-Manno-Octulosonate Cytidylyltransferase; Cytidyltransferase-Like Protein
Number of amino acids: Translated: 568; Mature: 567
Protein sequence:
>568_residues MSKALAIVGARLNSSRLAGKHLLELAGKPLIEQLWRRLTLCQEVNSFELATTADDFNKPLINWAHAHQICCHPFEGDVND LMARLDNIIQRQAPDFIIYICGDCPLIAPDFIDYALTRLKASGKDSIKLHDGVISIHEGMAFYSRKGWGKLMSVSQCAMS REHVGYADRITPVLDYLSIPDSANYSQIKHRISVDTQADYRFMEEVYRRWYKIHTVDTIVSLVWVQQQLLEDPMLAAINN HVKQKAANKLYAKASIYCHLGPSIGLGHYKRSKLIADALQEYLGIGAIVHVQYEGPQLEKTSPRLHWYKNENELLKAMIL DPNPLIVLDLHPDFISLPALRKTLQPLGDKNTKIVGIDKLISIIDELDWLFIPSFNNSFQHPKVSVGWQNYLFPSMLQQT KKHQILVLTGGSDALDYGTILPTLLSKLCTDWPIIWVQGPLAPPPLLPLSSTISVLTDPDDLHELIAESEIILTCYGLSL FESIFSSAASILLPTQHLCDSVELELLIKEHCCLTSSSLPDAISKLEALLSDCNARQKLQKEASRVFNDHAGMINLMEDI QRLLEQSV
Sequences:
>Translated_568_residues MSKALAIVGARLNSSRLAGKHLLELAGKPLIEQLWRRLTLCQEVNSFELATTADDFNKPLINWAHAHQICCHPFEGDVND LMARLDNIIQRQAPDFIIYICGDCPLIAPDFIDYALTRLKASGKDSIKLHDGVISIHEGMAFYSRKGWGKLMSVSQCAMS REHVGYADRITPVLDYLSIPDSANYSQIKHRISVDTQADYRFMEEVYRRWYKIHTVDTIVSLVWVQQQLLEDPMLAAINN HVKQKAANKLYAKASIYCHLGPSIGLGHYKRSKLIADALQEYLGIGAIVHVQYEGPQLEKTSPRLHWYKNENELLKAMIL DPNPLIVLDLHPDFISLPALRKTLQPLGDKNTKIVGIDKLISIIDELDWLFIPSFNNSFQHPKVSVGWQNYLFPSMLQQT KKHQILVLTGGSDALDYGTILPTLLSKLCTDWPIIWVQGPLAPPPLLPLSSTISVLTDPDDLHELIAESEIILTCYGLSL FESIFSSAASILLPTQHLCDSVELELLIKEHCCLTSSSLPDAISKLEALLSDCNARQKLQKEASRVFNDHAGMINLMEDI QRLLEQSV >Mature_567_residues SKALAIVGARLNSSRLAGKHLLELAGKPLIEQLWRRLTLCQEVNSFELATTADDFNKPLINWAHAHQICCHPFEGDVNDL MARLDNIIQRQAPDFIIYICGDCPLIAPDFIDYALTRLKASGKDSIKLHDGVISIHEGMAFYSRKGWGKLMSVSQCAMSR EHVGYADRITPVLDYLSIPDSANYSQIKHRISVDTQADYRFMEEVYRRWYKIHTVDTIVSLVWVQQQLLEDPMLAAINNH VKQKAANKLYAKASIYCHLGPSIGLGHYKRSKLIADALQEYLGIGAIVHVQYEGPQLEKTSPRLHWYKNENELLKAMILD PNPLIVLDLHPDFISLPALRKTLQPLGDKNTKIVGIDKLISIIDELDWLFIPSFNNSFQHPKVSVGWQNYLFPSMLQQTK KHQILVLTGGSDALDYGTILPTLLSKLCTDWPIIWVQGPLAPPPLLPLSSTISVLTDPDDLHELIAESEIILTCYGLSLF ESIFSSAASILLPTQHLCDSVELELLIKEHCCLTSSSLPDAISKLEALLSDCNARQKLQKEASRVFNDHAGMINLMEDIQ RLLEQSV
Specific function: Unknown
COG id: COG1861
COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63858; Mature: 63726
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKALAIVGARLNSSRLAGKHLLELAGKPLIEQLWRRLTLCQEVNSFELATTADDFNKPL CCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCH INWAHAHQICCHPFEGDVNDLMARLDNIIQRQAPDFIIYICGDCPLIAPDFIDYALTRLK HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH ASGKDSIKLHDGVISIHEGMAFYSRKGWGKLMSVSQCAMSREHVGYADRITPVLDYLSIP CCCCCCEEEECCEEEHHHCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC DSANYSQIKHRISVDTQADYRFMEEVYRRWYKIHTVDTIVSLVWVQQQLLEDPMLAAINN CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HVKQKAANKLYAKASIYCHLGPSIGLGHYKRSKLIADALQEYLGIGAIVHVQYEGPQLEK HHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC TSPRLHWYKNENELLKAMILDPNPLIVLDLHPDFISLPALRKTLQPLGDKNTKIVGIDKL CCCCEEEECCHHHHHHHEEECCCCEEEEEECCCHHCCHHHHHHHHHCCCCCCEEEEHHHH ISIIDELDWLFIPSFNNSFQHPKVSVGWQNYLFPSMLQQTKKHQILVLTGGSDALDYGTI HHHHHHCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH LPTLLSKLCTDWPIIWVQGPLAPPPLLPLSSTISVLTDPDDLHELIAESEIILTCYGLSL HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHEECCHHHHHHHHCCCCEEEEEHHHHH FESIFSSAASILLPTQHLCDSVELELLIKEHCCLTSSSLPDAISKLEALLSDCNARQKLQ HHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHH KEASRVFNDHAGMINLMEDIQRLLEQSV HHHHHHHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure SKALAIVGARLNSSRLAGKHLLELAGKPLIEQLWRRLTLCQEVNSFELATTADDFNKPL CCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCH INWAHAHQICCHPFEGDVNDLMARLDNIIQRQAPDFIIYICGDCPLIAPDFIDYALTRLK HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH ASGKDSIKLHDGVISIHEGMAFYSRKGWGKLMSVSQCAMSREHVGYADRITPVLDYLSIP CCCCCCEEEECCEEEHHHCHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC DSANYSQIKHRISVDTQADYRFMEEVYRRWYKIHTVDTIVSLVWVQQQLLEDPMLAAINN CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HVKQKAANKLYAKASIYCHLGPSIGLGHYKRSKLIADALQEYLGIGAIVHVQYEGPQLEK HHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC TSPRLHWYKNENELLKAMILDPNPLIVLDLHPDFISLPALRKTLQPLGDKNTKIVGIDKL CCCCEEEECCHHHHHHHEEECCCCEEEEEECCCHHCCHHHHHHHHHCCCCCCEEEEHHHH ISIIDELDWLFIPSFNNSFQHPKVSVGWQNYLFPSMLQQTKKHQILVLTGGSDALDYGTI HHHHHHCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH LPTLLSKLCTDWPIIWVQGPLAPPPLLPLSSTISVLTDPDDLHELIAESEIILTCYGLSL HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHEECCHHHHHHHHCCCCEEEEEHHHHH FESIFSSAASILLPTQHLCDSVELELLIKEHCCLTSSSLPDAISKLEALLSDCNARQKLQ HHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHH KEASRVFNDHAGMINLMEDIQRLLEQSV HHHHHHHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA