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The map label for this gene is yeaM [H]

Identifier: 126175061

GI number: 126175061

Start: 3366058

End: 3366945

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal_2857

Alternate gene names: 126175061

Gene position: 3366945-3366058 (Counterclockwise)

Preceding gene: 126175068

Following gene: 126175052

Centisome position: 65.67

GC content: 49.66

Gene sequence:

>888_bases
TTGGGCGATCACACCTTGAATCAAGTAACCGACACTCCTTTATCTCAGCAGCACATCACTCAGCACACGCAGGTCGCACC
TTCACGTTTAGCCGCCGCAGGGCTAAGCGCGTCCATCATGTTGCTTAAACGAATACTCAAGCCGTTTGAACATGTGCAGC
GCCATCGTCATTCTTGGGGACAGGTCATTTATGCCAGCCAAGGTGTGTTGAGTGTGATTACGCCAGCTGGGCGTTACATA
GTGCCGCCTGAACAAGCGGTGTGGGTGCCTCCCTTTGTCGATCATGAGGTTATCGCGCTAAGTCAGGTGCAATTGAGCAG
TCTGTATTTGGATGACACCCAGATAGGCGGTTTTCCACCCTGCTGTACTTGTCTGAATGTGAAGCCTGTTTTGCAGTTGC
TACTGCAAGAGGTTAATGCCTTCATGAAGAGTGAGGCTGGGCTGATTGATCCCGATTTTAAGGATAGCGTCATGCGGCTC
TTGATGGTGATCCGTGATTTTATGGTGCTCGCCCCTAAGGTCGCCTTAGATTTACCTTATCCTAAGGACAAAAAATTACT
GCGCATTACCGAGGCTTTGCTTGCAGATCCGAGCGAGCAACGTACTTTGGTAGATTGGCAGCGGGAGGTCGGTGCCTCGG
CCCGCACGTTAGCGAGATTATTTAAACAGCAAACAGGGTTGAGTTATAGCCAATGGCTGCAAAGGCTTAGATTGCAGGTG
GCGATTCAAATGCTCAGTCGAGGTGAATCTGTGCTCACTACAGCGTTATCTTTAGGTTATGCCTCTGGTTCAGCCTTTGG
TTATATGTTTAGGCAGTTGATGGGCGTCGCTCCGAGTCAGTACCTGTTAGCGCAAAGTACCTTGCCAAAAGTACAGTGCC
AAAAATAA

Upstream 100 bases:

>100_bases
GGCGGTAGCTCGATAGATTGACTTAATGTCTAGATAAAAAGACACTTGTATACGGAAGAGGCTCGATAATACGAAAAGAA
GCTTCAATATAAAAATCACC

Downstream 100 bases:

>100_bases
AAAGATAAATAGCCACAGATAAAAAGTATTGTCGCGAGTCAATGGGTCAATAAAAGTCCAATAACAAGCCAATAAAAAAC
GCACTTAAGCTGGGCTTAAG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MGDHTLNQVTDTPLSQQHITQHTQVAPSRLAAAGLSASIMLLKRILKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYI
VPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFPPCCTCLNVKPVLQLLLQEVNAFMKSEAGLIDPDFKDSVMRL
LMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLARLFKQQTGLSYSQWLQRLRLQV
AIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPSQYLLAQSTLPKVQCQK

Sequences:

>Translated_295_residues
MGDHTLNQVTDTPLSQQHITQHTQVAPSRLAAAGLSASIMLLKRILKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYI
VPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFPPCCTCLNVKPVLQLLLQEVNAFMKSEAGLIDPDFKDSVMRL
LMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLARLFKQQTGLSYSQWLQRLRLQV
AIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPSQYLLAQSTLPKVQCQK
>Mature_294_residues
GDHTLNQVTDTPLSQQHITQHTQVAPSRLAAAGLSASIMLLKRILKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIV
PPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFPPCCTCLNVKPVLQLLLQEVNAFMKSEAGLIDPDFKDSVMRLL
MVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLARLFKQQTGLSYSQWLQRLRLQVA
IQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPSQYLLAQSTLPKVQCQK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=235, Percent_Identity=31.4893617021277, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32862; Mature: 32731

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDHTLNQVTDTPLSQQHITQHTQVAPSRLAAAGLSASIMLLKRILKPFEHVQRHRHSWG
CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
QVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFPP
CEEEECCCHHHHHCCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCC
CCTCLNVKPVLQLLLQEVNAFMKSEAGLIDPDFKDSVMRLLMVIRDFMVLAPKVALDLPY
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCC
PKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLARLFKQQTGLSYSQWLQRLRLQV
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPSQYLLAQSTLPKVQCQK
HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GDHTLNQVTDTPLSQQHITQHTQVAPSRLAAAGLSASIMLLKRILKPFEHVQRHRHSWG
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
QVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFPP
CEEEECCCHHHHHCCCCCEEECCCCCEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCC
CCTCLNVKPVLQLLLQEVNAFMKSEAGLIDPDFKDSVMRLLMVIRDFMVLAPKVALDLPY
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEECCC
PKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLARLFKQQTGLSYSQWLQRLRLQV
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPSQYLLAQSTLPKVQCQK
HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]