| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is gltX
Identifier: 126175009
GI number: 126175009
Start: 3294584
End: 3295993
Strand: Reverse
Name: gltX
Synonym: Sbal_2802
Alternate gene names: 126175009
Gene position: 3295993-3294584 (Counterclockwise)
Preceding gene: 126175017
Following gene: 126175007
Centisome position: 64.28
GC content: 44.33
Gene sequence:
>1410_bases ATGACAACTAAGACGCGTTTTGCCCCTAGTCCTACTGGTTTCTTACATGTTGGTGGTGCCCGTACTGCACTTTATTCTTG GTTACAAGCTCGTGCCAATAACGGTGAGTTTGTATTACGCATTGAAGACACTGATATTGAGCGTTCGACTCAAGCCGCCT GCGATGCGATTTTAGAAGGTATGAACTGGTTAGGTTTGACATGGGACGAGGGCCCGTATTACCAAACTAAGCGTTTTGAT CGTTATAACGAAATCATTGCCCAAATGTTAGCAAAGGGCACTGCATACAAATGCTATTGCTCACGTGAGCGTATTGATGC GTTAAGAGAAGCACAAGCCGCCAACGGTGAAGCACAAAAGTACGATGGTTGCTGCCGTGACTTGCCTGCTCGTGATACTG ATGAGCCATTTGTCGTGCGCTTCAAAAATCCTATCGGCGGTTCAGTGGTATTTGATGACCATGTTCGTGGCCGTATTGAA TTTTCTAACGATGCATTAGATGACTTGATCATCGCCCGTACCGATGGTGTGCCAACCTATAACTTCTGTGTAGTCGTTGA CGATTGGGATATGGGAATTACTTGTGTGGTTCGTGGTGAAGATCATATCAACAATACGCCGCGTCAAATTAATATCCTTA AAGCATTAGGGGCGCCAATCCCAGAATATGCTCACGTCTCTATGATTCTCGGTGATGATGGCGCGAAATTATCTAAGCGT CATGGCGCAGTGAGCGTAATGCAGTACCGTGACGATGGTTATTTGCCAGAAGCACTGTTGAACTACCTAGTACGTTTAGG TTGGTCACATGGTGATCAAGAGATCTTCTCTTTAGAAGAAATGAAGCAATACTTTAAGCTCGGTGATATCAATAAAGCCG CTTCTGCCTTTAATACCGATAAACTGGTGTGGTTGAACCAACACTATATAAAGAGTCTTGCCCCAGAATATGTGGCAACA CACTTACAATGGCACATGGACGATCAAGAAATTGATCTGTCAAACGGCCCAGCATTAGCTGAAGTGGTTACTGCATTAGC TGAACGCGCTAAGACACTAAAAGAGTTAGCCGCTTCTAGCCGCTATTTCTATGAAGACTTTGCAGAGTTTGATGAAGCCC AAGCGAAAAAGCATTTACGTGGTGTTGCGTTAGAGCCATTGCAACTGGTTCAACAAAAATTAGCCGCATTAACTGATTGG ACTGTAGAAGCTATCCATCAGGCGATTGAAGACACTGCAACAGAATTAGATGTGGGTATGGGCAAGGTTGGTATGCCTTT ACGTGTCGCTGTAACAGGGGCAGGGCAGTCACCAGGCCTTGATATCACATTATTTTTAATCGGAAGAAGCCGTTCTGAGC AAAGAATATCCAAAGCGATTGAATTTGTAGCAGATAGAATAAATTCCTAA
Upstream 100 bases:
>100_bases TTGTCCCATTTGCAGCGCCTGCTTTGACTGTTAGAATAAGCCCACTTTTTTATCGTGATTGTCTTTATCTAGACGACTTT ATATAGGTTAGTGTCCCATT
Downstream 100 bases:
>100_bases AAAACGAGTTGACACTTTTAGGTGCGCTGCATAGAATGCGCCACGCAGTTGAGACACAGACGAGCAAATGCTTGTAGTGC ACTTAAATGTAGTTTAATAA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEGMNWLGLTWDEGPYYQTKRFD RYNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQKYDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIE FSNDALDDLIIARTDGVPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKR HGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTDKLVWLNQHYIKSLAPEYVAT HLQWHMDDQEIDLSNGPALAEVVTALAERAKTLKELAASSRYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTDW TVEAIHQAIEDTATELDVGMGKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS
Sequences:
>Translated_469_residues MTTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEGMNWLGLTWDEGPYYQTKRFD RYNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQKYDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIE FSNDALDDLIIARTDGVPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKR HGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTDKLVWLNQHYIKSLAPEYVAT HLQWHMDDQEIDLSNGPALAEVVTALAERAKTLKELAASSRYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTDW TVEAIHQAIEDTATELDVGMGKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS >Mature_468_residues TTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEGMNWLGLTWDEGPYYQTKRFDR YNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQKYDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIEF SNDALDDLIIARTDGVPTYNFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKRH GAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTDKLVWLNQHYIKSLAPEYVATH LQWHMDDQEIDLSNGPALAEVVTALAERAKTLKELAASSRYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTDWT VEAIHQAIEDTATELDVGMGKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=332, Percent_Identity=33.7349397590361, Blast_Score=204, Evalue=2e-52, Organism=Escherichia coli, GI1788743, Length=469, Percent_Identity=73.5607675906183, Blast_Score=727, Evalue=0.0, Organism=Escherichia coli, GI226510925, Length=242, Percent_Identity=39.2561983471074, Blast_Score=164, Evalue=1e-41, Organism=Escherichia coli, GI1786895, Length=218, Percent_Identity=24.7706422018349, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71993394, Length=480, Percent_Identity=29.7916666666667, Blast_Score=202, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6324540, Length=500, Percent_Identity=31.6, Blast_Score=246, Evalue=7e-66, Organism=Saccharomyces cerevisiae, GI6321192, Length=229, Percent_Identity=27.9475982532751, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324742, Length=120, Percent_Identity=31.6666666666667, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI24665321, Length=492, Percent_Identity=30.0813008130081, Blast_Score=240, Evalue=1e-63,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_SHEB5 (A3D6C6)
Other databases:
- EMBL: CP000563 - RefSeq: YP_001051158.1 - ProteinModelPortal: A3D6C6 - SMR: A3D6C6 - STRING: A3D6C6 - GeneID: 4843717 - GenomeReviews: CP000563_GR - KEGG: sbl:Sbal_2802 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: MAHIPLI - PhylomeDB: A3D6C6 - ProtClustDB: PRK01406 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 52454; Mature: 52323
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 239-239
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEG CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHC MNWLGLTWDEGPYYQTKRFDRYNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQK CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCHH YDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIEFSNDALDDLIIARTDGVPTY HCCHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCHHHEEEEECCCCCCE NFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKR EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH HGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTD CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCC KLVWLNQHYIKSLAPEYVATHLQWHMDDQEIDLSNGPALAEVVTALAERAKTLKELAASS EEEEECHHHHHHHCHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC RYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTDWTVEAIHQAIEDTATELDVGM CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS CCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTKTRFAPSPTGFLHVGGARTALYSWLQARANNGEFVLRIEDTDIERSTQAACDAILEG CCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHC MNWLGLTWDEGPYYQTKRFDRYNEIIAQMLAKGTAYKCYCSRERIDALREAQAANGEAQK CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCHH YDGCCRDLPARDTDEPFVVRFKNPIGGSVVFDDHVRGRIEFSNDALDDLIIARTDGVPTY HCCHHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEECCCCHHHEEEEECCCCCCE NFCVVVDDWDMGITCVVRGEDHINNTPRQINILKALGAPIPEYAHVSMILGDDGAKLSKR EEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH HGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFSLEEMKQYFKLGDINKAASAFNTD CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCC KLVWLNQHYIKSLAPEYVATHLQWHMDDQEIDLSNGPALAEVVTALAERAKTLKELAASS EEEEECHHHHHHHCHHHHHHHHHEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC RYFYEDFAEFDEAQAKKHLRGVALEPLQLVQQKLAALTDWTVEAIHQAIEDTATELDVGM CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GKVGMPLRVAVTGAGQSPGLDITLFLIGRSRSEQRISKAIEFVADRINS CCCCCCEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA