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The map label for this gene is secD [H]

Identifier: 126174992

GI number: 126174992

Start: 3273691

End: 3275541

Strand: Reverse

Name: secD [H]

Synonym: Sbal_2785

Alternate gene names: 126174992

Gene position: 3275541-3273691 (Counterclockwise)

Preceding gene: 126174993

Following gene: 126174991

Centisome position: 63.88

GC content: 49.76

Gene sequence:

>1851_bases
GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGATGCTCGTCATCGCCATAGGTTGTTTCTATGCCGTACCGAA
CCTTTTTGGTGAAGATCACGCGGTGCAAGTGGTGGCGACTCGAGGTGCTGAAGTCACGGCATCAACCCAAGCCAGTGTGA
ACGAGCTGTTAGCCAGTAAGGGCATTGCGGTAAAGCGCTCTGAGCTTGAAAAAGGTCAGTTGTTGGTCCGTGTGCAAAAT
GCGGATCAACAGCTACTGGCGAAAGAATTAATTGCTGACAGCTTAGGTGACAAGTTCACTGTGGCGCTCAACTTAGCCCC
AGCGACGCCTAAATGGCTCGAGTCAATGGGCGGCAGCCCAATGAAACTCGGTCTCGACCTTCGCGGCGGTGTGCATTTCT
TAATGGAAGTGGACATGGGCGAAGCGATTCGCAAGATGGAAGAGGCTAAAGTTGCCGATTTCCGTTCGCAACTGCGCGAA
GAGAAAATTCGTTATGCCGGTATTCGTAGCAATACCACAGGTATCGAAATCAAGTTCCGTGATGCTGAAAGTCTCGCGAG
TGCCGAGCGTTTCCTTAAGTCTCGCAGTAAAGATATGGTGTTCACTGATGCTAGCCGTGGCGAAGATTTTGCCCTGCAAG
CTGTGATGAGTGACGTGTACCTTAAGCAGATTAAAGAAGAAGCACTGCAACAAAACATTACGACCATTCGTAACCGTGTA
AACGAGTTAGGTGTGGCTGAGCCTGTAGTACAACGTCAAGGCGCCGAGCGCATTATCGTTGAGCTGCCAGGTGTGCAAGA
TACGGCTCGCGCCAAGGAAATCTTAGGTGCAACCGCATCGATTGAATTCCACATGGTCGATGACAAAGCTGATCCTAATG
CTGCGCAATCAGGCCGTTTACCAGCGGGTTCTGAAGTGTACCAGCGCCGCGAAGGTGGCACTGTGATATTGAAGAAAGAA
GTTATGCTGACCGGTGATCATATCACGGGCGCACAACCTAGCTTTGACCAGTACAGTCGTCCACAGGTTAGCATCAACCT
TGATGCGAAAGGCGGCACCATTTTCTCTGACGTGACCAAAGACAACATAGGCAAGCCTATGGCGACATTGTTCATCGAAT
ATAAAGACAGTGGTGAGCGCAATGCCGACGGCAGCGTTAAGATGCAGAAAATCCAAGAAGTGATTTCTGTAGCGACCATT
CAAGCGCGTTTAGGCCGTAACTTTGTGATCACTGGCTTAAGCCATGGTGAAGCTCAAAACCTCGCACTATTACTGCGTGC
GGGTGCCTTGATTGCCCCAGTGTCGATTGTTGAAGAACGTACCATTGGTCCAAGCTTAGGTGCTGAAAACATTCAAAACG
GTGTGCAAGCTATGGTTTGGGGTATGGCGGTTGTCTTACTCTTTATGCTGGTTTACTACCGTGGTTTTGGTCTTATCGCC
AACATAGCGTTAACCGCAAACTTAGTCATGGTGGTGGGCGTAATGTCTATGATCCCTGGCGCAGTATTAACCCTACCGGG
TATTGCCGGTATGGTGTTGACTGTGGGTATGGCGGTTGATGGTAACGTGCTGATCTATGAGCGTATCCGTGAAGAATTAC
GTGCGGGCCGTAGCGTCCAGCAGGCCATCCATGAAGGTTATGGTAACGCATTCTCCACCATCGCCGATGCGAACATCACC
ACTTTCCTAACGGCGCTGATTCTGTTTGCCGTAGGTACAGGCGCTGTTAAAGGCTTCGCGGTGACCTTGATGATAGGTAT
TGCGACTTCCATGTTTACCGCAATCGTGGGTACTCGCTCAATCGTTAACGCGATTTGGGGTGGTAAGCGCGTGAAGACTC
TGTCTATCTAA

Upstream 100 bases:

>100_bases
GCTTAAACGACACGACTCAAATCACGATCAAAAAAGACTATATTGCAGCTGTATTGCCTAAGGGCTCTATCCAGTCGTTG
TAAGCCAAGAGGGCTCAGGC

Downstream 100 bases:

>100_bases
GGGGAAGTGACAATGCTTGAAATTTTATCTTTAAAACATACGGTAAACTTCCTCCGTCATGCACTGCCTATCAGTATTAT
GTCGGCTGTATTGGTGCTGG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRSNTTGIEIKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA
NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRSNTTGIEIKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA
NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI
>Mature_616_residues
MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRSNTTGIEIKFRDAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA
NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=58.5760517799353, Blast_Score=734, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66521; Mature: 66521

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
DAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRL
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTK
CCCHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC
>Mature Secondary Structure
MLNKYPMWKNIMVMLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQASVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKELIADSLGDKFTVALNLAPATPKWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRSNTTGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
DAESLASAERFLKSRSKDMVFTDASRGEDFALQAVMSDVYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRL
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSDVTK
CCCHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYRGFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
NIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]