Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 126174905

GI number: 126174905

Start: 3164018

End: 3164614

Strand: Reverse

Name: scpB [H]

Synonym: Sbal_2697

Alternate gene names: 126174905

Gene position: 3164614-3164018 (Counterclockwise)

Preceding gene: 126174906

Following gene: 126174904

Centisome position: 61.72

GC content: 44.39

Gene sequence:

>597_bases
ATGCAGATAAATCCGACTCAATTAAAACAGCTTATTGAAGCGAGTTTGTTTGTATTGGGGAAACCCTTGTCGGCGAAAAT
GTTGAAAGACACTGTATTGGTGGATTTCACGGTTTCCAGAGACAAAATAAAAGCTGCATTGGATGAGCTGCAGCAGGATT
ATCAAGACAGAGGTGTACAACTTGTGAAAGTCGCTGGAGGTTATCGCTTCCAGACCTTAGACGTCTTGAGTCCTTTTTTG
CAGCCCTTGTGGCAAGAAAAGGCGCCTAAATATTCGCGTGCGACATTAGAAACCTTGGCGGTGATTGCTTATCGTCAACC
TGTGACTCGCGGCGATATTGAACAGGTGCGCGGTGTGGCCATTAGTAGTCACATCATAAAAAGTTTGTCAGATAGACATT
GGATTAAAGTAGTTGGCCATAAAGAAGTACCGGGGCGACCCGCGTTGTATGCCACTACCTTAGAATTTTTAGCATATTTT
GGCTTAGACACCTTAGCGGATTTACCGCCGCTGTCGGATACTGAGTCATTGCAGGCGGTTTTTTCAAGTGTGAAATTAAC
GCCGGAACAGTCAGAAGAGCAAAATACTAATGAGTGA

Upstream 100 bases:

>100_bases
CGTGACCTTCTTAGCATTGATGGAATTAGTCAAAGAATTATTGGTTGAATTGTACCAAACAGAACCGTTTTCAACTATTT
ACGTTAAGGCCTATTAATTG

Downstream 100 bases:

>100_bases
AAAATTGCAGAAAGTCTTGGCCCGTGCAGGCCATGGCTCCCGTCGTGAGATGGAGGCATGGATTGCTGCAGGCCGAGTTA
GTATTGATGGTGAAATTGCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQINPTQLKQLIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRFQTLDVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPPLSDTESLQAVFSSVKLTPEQSEEQNTNE

Sequences:

>Translated_198_residues
MQINPTQLKQLIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRFQTLDVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPPLSDTESLQAVFSSVKLTPEQSEEQNTNE
>Mature_198_residues
MQINPTQLKQLIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQLVKVAGGYRFQTLDVLSPFL
QPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVAISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYF
GLDTLADLPPLSDTESLQAVFSSVKLTPEQSEEQNTNE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 22168; Mature: 22168

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINPTQLKQLIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCEE
LVKVAGGYRFQTLDVLSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVA
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPLSDTESLQAV
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHH
FSSVKLTPEQSEEQNTNE
HHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQINPTQLKQLIEASLFVLGKPLSAKMLKDTVLVDFTVSRDKIKAALDELQQDYQDRGVQ
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHCCEE
LVKVAGGYRFQTLDVLSPFLQPLWQEKAPKYSRATLETLAVIAYRQPVTRGDIEQVRGVA
EEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
ISSHIIKSLSDRHWIKVVGHKEVPGRPALYATTLEFLAYFGLDTLADLPPLSDTESLQAV
HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHH
FSSVKLTPEQSEEQNTNE
HHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]