Click here to switch to the map view.

The map label for this gene is sohB [H]

Identifier: 126174900

GI number: 126174900

Start: 3157325

End: 3158341

Strand: Reverse

Name: sohB [H]

Synonym: Sbal_2692

Alternate gene names: 126174900

Gene position: 3158341-3157325 (Counterclockwise)

Preceding gene: 126174901

Following gene: 126174899

Centisome position: 61.6

GC content: 43.46

Gene sequence:

>1017_bases
TTGGAATTTTTATACGAGTATGGAATGTTTTTGGCGAAAGCCGTCACGATAGTGGTCGCAATCGTTGCGGTTATTATTGT
GGTGTTGGCTTCCACTGTTAAACATAAGTCAGATAAGGGCGAGCTGAGGATCACTAACCTGTCTGAAGAGTTAGAAGAAC
TGAAGCATGGCTTAAAAGAAGAACTCCTTTCAAAGAAGCAATTCAAAGCCTATGAGAAGCAATTAAAGGCTGAAGAAAAA
GCGAAAGACAAAGCTGCTGATGATACTAGCACGGGCAAAGTGTTCGTGATCGATTTCAAGGGCAGTATCGATGCTGCTGA
GGTTGCGTCACTGCGTGAAGAAATCAGTGCCATTTTAGCTATCGCGGAAAAAGGCGATGAAGTGGTTGTTAATGTCGAAA
GTGGTGGCGGTATGGTGCATGGCTACGGTTTAGCCTCCAGCCAGCTTGACCGTTTACGCCAAGCCGAAATTCCGCTAACA
GTATGCGTTGATAAAGTGGCTGCCAGTGGCGGTTATATGATGGCCTGTGTTGCGAATAAAATTTATGCTGCGCCTTTTGC
AATTGTTGGTTCAATTGGTGTTGTTGCTCAACTGCCTAACTTTAATCGTTTGCTGAAAAAGCATGAAATTGATTATGAGC
AACATACCGCCGGTAATTTTAAACGCACTTTGACAGTGTTTGGTGAAAACTCCGATGAGGGAAGACAGAAGTTTCAAGAA
GAACTCGAAGAAACCCACATCTTATTCAAAGCGTTTGTCGGTAAATATCGCCCTGAGTTGGATTTAGTGAAAGTAGCCAC
GGGCGAGCATTGGTATGGCCAGCAAGCCATTGAATTAGGGTTAGTTGATGCGATTTCGACCAGTGATGATGTAATTATGT
CACTTGCCGCAGAGCGCACTGTGTATAAGATGCGTTATCAGGTGAGAAAGAAACTTGCCGATAAAATTGCCCATGGCGCA
TCTTTATCTGTGAATGCCATTTTTAATCGTCTTATCGAGAAAAACCGTCCAATGTAA

Upstream 100 bases:

>100_bases
TCGGAAAAACCCAGCGAATGCTGGGTTTTTTTATGGGCCTTTAGGCTGTTAGAATAGCTCGCAATTGACTGATTAATGTA
ACGCCCTAACGGAGAGCACT

Downstream 100 bases:

>100_bases
CGGAATCTAGTGTGGATACTTTTTTAGTATTCACACTTTTTTGTTTCGCTTAACGCCCAAAGCTGCGTATCTATTGCAGA
TTTTTTTGGCTTTTATATTA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEFLYEYGMFLAKAVTIVVAIVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHGLKEELLSKKQFKAYEKQLKAEEK
AKDKAADDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
VCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQE
ELEETHILFKAFVGKYRPELDLVKVATGEHWYGQQAIELGLVDAISTSDDVIMSLAAERTVYKMRYQVRKKLADKIAHGA
SLSVNAIFNRLIEKNRPM

Sequences:

>Translated_338_residues
MEFLYEYGMFLAKAVTIVVAIVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHGLKEELLSKKQFKAYEKQLKAEEK
AKDKAADDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
VCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQE
ELEETHILFKAFVGKYRPELDLVKVATGEHWYGQQAIELGLVDAISTSDDVIMSLAAERTVYKMRYQVRKKLADKIAHGA
SLSVNAIFNRLIEKNRPM
>Mature_338_residues
MEFLYEYGMFLAKAVTIVVAIVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHGLKEELLSKKQFKAYEKQLKAEEK
AKDKAADDTSTGKVFVIDFKGSIDAAEVASLREEISAILAIAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLT
VCVDKVAASGGYMMACVANKIYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQE
ELEETHILFKAFVGKYRPELDLVKVATGEHWYGQQAIELGLVDAISTSDDVIMSLAAERTVYKMRYQVRKKLADKIAHGA
SLSVNAIFNRLIEKNRPM

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=349, Percent_Identity=55.5873925501433, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 37359; Mature: 37359

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLYEYGMFLAKAVTIVVAIVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHGLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
ELLSKKQFKAYEKQLKAEEKAKDKAADDTSTGKVFVIDFKGSIDAAEVASLREEISAILA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
IAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLTVCVDKVAASGGYMMACVANK
HHCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHH
IYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQE
HHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHH
ELEETHILFKAFVGKYRPELDLVKVATGEHWYGQQAIELGLVDAISTSDDVIMSLAAERT
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VYKMRYQVRKKLADKIAHGASLSVNAIFNRLIEKNRPM
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEFLYEYGMFLAKAVTIVVAIVAVIIVVLASTVKHKSDKGELRITNLSEELEELKHGLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHH
ELLSKKQFKAYEKQLKAEEKAKDKAADDTSTGKVFVIDFKGSIDAAEVASLREEISAILA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
IAEKGDEVVVNVESGGGMVHGYGLASSQLDRLRQAEIPLTVCVDKVAASGGYMMACVANK
HHCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHHHH
IYAAPFAIVGSIGVVAQLPNFNRLLKKHEIDYEQHTAGNFKRTLTVFGENSDEGRQKFQE
HHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHH
ELEETHILFKAFVGKYRPELDLVKVATGEHWYGQQAIELGLVDAISTSDDVIMSLAAERT
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
VYKMRYQVRKKLADKIAHGASLSVNAIFNRLIEKNRPM
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]