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The map label for this gene is slyD [H]

Identifier: 126174803

GI number: 126174803

Start: 3035131

End: 3035619

Strand: Reverse

Name: slyD [H]

Synonym: Sbal_2590

Alternate gene names: 126174803

Gene position: 3035619-3035131 (Counterclockwise)

Preceding gene: 126174804

Following gene: 126174801

Centisome position: 59.2

GC content: 51.33

Gene sequence:

>489_bases
ATGAGCATTAAAGACGATATGGTTGTGCAGTTTAACTACACGCTGCGTGACGAGAAAGGCGAAGTGATCGAGACGAACGA
AGGTCGCGATCCCATTGCCTATTTACACGGTCATGACAACCTGATGCCAGGTGTAGAAAACGCGATCAATGGTAAAGCCA
TCGGTGAAAAGTTCACTGTGACTTTACCTGCTGCCGAAACATACGGTGAGCGCGTAGCGGATGCTGATGCGCACCAACGT
GTGTCGGTTAAGCACTTATTGGGCGCGACTGCGTGGAAACCGGGTATGACTGCTGTGGTCAATACTGACCAAGGTCAACG
CCAAGTGACTATCGTTAAAGTGGGTAAGTTTATGGCGACTGTGGATGTCAACCATCCATTAGCGGGCCGCGAACTGACAT
TTGATATCGAAGTCGTGGGTGCCCGTGACGCTAGTGATGAAGAAATCGCCCACGGCCATGCCCATGGCGCTGGTGGTCAT
CACCACTAA

Upstream 100 bases:

>100_bases
GTTTTGAGCGCTTTTAGGCCGGATAAAAAAGTGGAGTGAAAAGCTCAGTTTTGTTAAGCTCGGCCCACAATTGAAATCGA
AGAAAATCAAAGGATATTCG

Downstream 100 bases:

>100_bases
TCTTTAGGCTTCGGGTTCGGCTTCGCACTTGGCTTTTATCTGACTCAATGTGAGATGAATATAAGTTCAGTATGAGTTGA
ATGAATCGTGGCTAAAGATT

Product: peptidylprolyl isomerase FKBP-type

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSIKDDMVVQFNYTLRDEKGEVIETNEGRDPIAYLHGHDNLMPGVENAINGKAIGEKFTVTLPAAETYGERVADADAHQR
VSVKHLLGATAWKPGMTAVVNTDQGQRQVTIVKVGKFMATVDVNHPLAGRELTFDIEVVGARDASDEEIAHGHAHGAGGH
HH

Sequences:

>Translated_162_residues
MSIKDDMVVQFNYTLRDEKGEVIETNEGRDPIAYLHGHDNLMPGVENAINGKAIGEKFTVTLPAAETYGERVADADAHQR
VSVKHLLGATAWKPGMTAVVNTDQGQRQVTIVKVGKFMATVDVNHPLAGRELTFDIEVVGARDASDEEIAHGHAHGAGGH
HH
>Mature_161_residues
SIKDDMVVQFNYTLRDEKGEVIETNEGRDPIAYLHGHDNLMPGVENAINGKAIGEKFTVTLPAAETYGERVADADAHQRV
SVKHLLGATAWKPGMTAVVNTDQGQRQVTIVKVGKFMATVDVNHPLAGRELTFDIEVVGARDASDEEIAHGHAHGAGGHH
H

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=152, Percent_Identity=38.8157894736842, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 17540; Mature: 17409

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKDDMVVQFNYTLRDEKGEVIETNEGRDPIAYLHGHDNLMPGVENAINGKAIGEKFTV
CCCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEE
TLPAAETYGERVADADAHQRVSVKHLLGATAWKPGMTAVVNTDQGQRQVTIVKVGKFMAT
EECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEEE
VDVNHPLAGRELTFDIEVVGARDASDEEIAHGHAHGAGGHHH
EECCCCCCCCEEEEEEEEEECCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SIKDDMVVQFNYTLRDEKGEVIETNEGRDPIAYLHGHDNLMPGVENAINGKAIGEKFTV
CCCCCEEEEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEE
TLPAAETYGERVADADAHQRVSVKHLLGATAWKPGMTAVVNTDQGQRQVTIVKVGKFMAT
EECCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEECCEEEE
VDVNHPLAGRELTFDIEVVGARDASDEEIAHGHAHGAGGHHH
EECCCCCCCCEEEEEEEEEECCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]