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The map label for this gene is ycfH [H]

Identifier: 126174669

GI number: 126174669

Start: 2870155

End: 2871006

Strand: Reverse

Name: ycfH [H]

Synonym: Sbal_2456

Alternate gene names: 126174669

Gene position: 2871006-2870155 (Counterclockwise)

Preceding gene: 126174670

Following gene: 126174667

Centisome position: 55.99

GC content: 48.59

Gene sequence:

>852_bases
TTGACCTCGATCCCTTGGCTGGGTATCCTTGTCTTCCTTTTGTTATTCTGCTTGGAAATCCCTGTGCTTATTGATTCACA
CTGCCATCTCGATCGCCTTAAAGCGGCGCCTGATCAACAAACCCTAGAACATATTCTGGCCAGCGCGAAAGCCCGTGGCG
TGGACTATATGCTATGCGTCAACGTGCGCCAGCAGGGATTTGAATCGATGCGAGATAAAGTTGCAGCCTTCGATCAGGTA
TTTTTGTCATCGGGCGTGCATCCATTAGACGTTAAAGAAGGGCTTGATGTTGAGCAAATCCGCCGCTTTGCCACCGATCC
TAAAGTGGTCGCGATTGGTGAAACTGGCCTAGATTATTTTTATGCCGACGAAACTAAATTGCTGCAACAACAATGTTTTG
AGCAGCAGATCGCCCTTGCGGTCGAAGTGAATAAACCTTTGATTGTCCATACTCGCGATGCGCGTGAAGACACGATCACT
ATGCTTAAGCAGGGCAACGCGGATAAAGTTGGCGGCGTACTGCATTGCTTTACCGAGAATTGGGAAATGGCGAAAGCGGC
GATTGACCTTGGCTTTTACATTTCAGTATCAGGCATAGTCACTTTTAAAAATGCCGGTGAACTTCGCACTGTTATCCGTA
AAGTGCCACAGGATCGCCTGCTGGTTGAAACAGACTCGCCCTATTTGGCGCCTATTCCACACCGTGGACAAGAAAACCAG
CCCGCCTATGTGCGTGATGTTGCTGAGTTTGTGGCCGAGCTTAGAGGTGAGCGCTACGAGGATCTTGCTGAGTACACCAG
TAATAACTTCTTTAATTTATTCAAAGATGCGGCGCGTTTAGTCGGCCGTTAG

Upstream 100 bases:

>100_bases
ACTTAGGTTTAAACGCTCTGCTTTAAGCGTTACTCTCGTTTAACTGTTCTAGTTTTAACATTGGCCCACACTCTAAACTG
ATACTTCGCCTCCGTGGAAT

Downstream 100 bases:

>100_bases
CTTTAAGTGTTTTGACCCATGTTATGCGATTGCGTGCTTGCCAACACTGAGACATAAAGGCTCAGGCAAAAAGACTCAGG
CATAAAGGTACTGGGATAAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTSIPWLGILVFLLLFCLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQV
FLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTIT
MLKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR

Sequences:

>Translated_283_residues
MTSIPWLGILVFLLLFCLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQV
FLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTIT
MLKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
>Mature_282_residues
TSIPWLGILVFLLLFCLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQVF
LSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITM
LKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQP
AYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=29.520295202952, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349734, Length=280, Percent_Identity=28.9285714285714, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061853, Length=287, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI226061614, Length=267, Percent_Identity=28.8389513108614, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI225903424, Length=225, Percent_Identity=29.7777777777778, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903439, Length=236, Percent_Identity=27.9661016949153, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI14042943, Length=272, Percent_Identity=26.8382352941176, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=29.3617021276596, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=55.5984555984556, Blast_Score=285, Evalue=2e-78,
Organism=Escherichia coli, GI48994985, Length=237, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=31.1538461538462, Blast_Score=117, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=266, Percent_Identity=27.0676691729323, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=30.6273062730627, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=297, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=257, Percent_Identity=26.0700389105058, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24586117, Length=240, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI221330018, Length=240, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24648690, Length=294, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31916; Mature: 31785

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIPWLGILVFLLLFCLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCV
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEE
NVRQQGFESMRDKVAAFDQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEE
YADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITMLKQGNADKVGGVLHCFTEN
ECCHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHCCCCCHHCCEEEEECCC
WEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
HHHHHHHHHHCEEEEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCC
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSIPWLGILVFLLLFCLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEE
NVRQQGFESMRDKVAAFDQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEE
YADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITMLKQGNADKVGGVLHCFTEN
ECCHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHCCCCCHHCCEEEEECCC
WEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
HHHHHHHHHHCEEEEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCC
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]