Click here to switch to the map view.

The map label for this gene is yebU [H]

Identifier: 126174668

GI number: 126174668

Start: 2868340

End: 2869857

Strand: Direct

Name: yebU [H]

Synonym: Sbal_2455

Alternate gene names: 126174668

Gene position: 2868340-2869857 (Clockwise)

Preceding gene: 126174666

Following gene: 126174678

Centisome position: 55.94

GC content: 47.43

Gene sequence:

>1518_bases
ATGATATACTCGCGCCAGTTGATACACAGTCTATTTTCCTATGGTTCAATGAAATCAATGGTTCAATTAAATCAAAATTT
TATCGATACAATCACCCAAGAACTCCCCGCCCATTTATCCATGGACGAGTTTATTGCCGCCTGCGACAAGCCGCTTAGAC
GTTCAATTCGGGTCAATACCTTAAAAATCAGCAGCGACGACTTTAAGACTCTGATGCAACCTAAGGGCTGGACGTTTGAT
CCTATTCCTTGGTGTGAAGACGGATTTTGGATCAGCTACGATGAAGAAGAACAACTCGGCAATGCCTTAGAGCACATTCA
GGGCTTATTCTACATTCAAGAAGCCAGCTCTATGTTGCCGCCGACCGCACTTTTTACGCCTAGTGCATTTACGACTAGTG
CAAAGTGGCAGTGCGTACTCGATCTCGCCTCTGCGCCGGGTTCAAAAACCACGCAAATGGCCGCATTGATGCAAAACCAA
GGTTTATTGGTAGCGAATGAGTATTCGGCGAGCCGCGTGAAAGTATTGCACGCCAATGTGCTGCGCATGGGCGCAAGTCA
CTGTGCTCTCACCCATTTCGATGGCCGTGTGTTTGGCGAATACCTGTACGAAAGTTTCGATGCAGTGCTCATTGATGCGC
CCTGTGGCGGCGAAGGCACAGTGCGTAAAGATGCCGATGCGCTAAAACACTGGAGCCTTGACGATGTGTTGGCCATTAGT
GAAACCCAAAAAGCCTTAATCGAATCAGCGTTTCTCGCCCTGAAACCCGGCGGCAGTTTGGTCTACTCAACCTGCACCTT
AAACCGCCTCGAAAACCAAGGCGTGTGCGAGTATTTAAAGCAAGTCTACGGCGATGCCGTGCAATTTGAATCCTTAAGTG
ATTTATTTGATGGCGCTGATCGAGCCACGACAGCCGAAGGCTTCTTGCATGTCTGGCCGCAGATTTACGACAGTGAAGGT
TTCTTTGTCGCTAAATTGACAAAAACTGCCTCTGTGCCGCGATTACTGCCTGAGCCTAAACTGCAGAAAAACTTCCCCTT
CACGACCGCATCAGCGAAACAAGCTCAAGGGATCAAAGACTATTTTCAGCAGGATTTAGGTATCAGCTTACCGGACGAAC
TCATCATGGTTCGCGATGATGAATTCTGGCTATTTCCCCATGAATTCAACGCTTTTATCGGCCGTATGCGCTTTCAGCGT
ATTGGCATTAAACTCGCCGATAACAGTAAGCACGGGTTTAAAGTCCGCCATGAAGCGATTATTGCTTTAGCGGGAAAACA
ACTTAGCCCAACGGCAAAAACGGTCGATGTGAGCGATGTTGAAGCTAAAGAGTATTTAATGGGGCGAGATATTCCCTTAG
CCACCGCAGGCAAAGCCCAAGGTGAAGTGATCGTCTGTTATGGCGGCGCGCCATTAGGCATGGCGAAACATTTAGGCAAT
AAGTTAAAAAACAACCTGCCCAGAGACTTAGTGAAAGATAAAGTGTTATTGCTACCAGAACAGACAAAATCGTTATAG

Upstream 100 bases:

>100_bases
GCGACTCATTCTATTATTGCGGCAATCGTCAGTGCATAAACCTCAAATCACCATAACGGCTGAGGCACTTGGGATAAAAT
CTCAGACCCAATAAGGGATT

Downstream 100 bases:

>100_bases
TTCTGCTGTTTTTTAGCGATAAATAACCTAAAAAAGGGGAAGGTGAACGCGACTCTAGGGCAAAAGCTCAACTACACTGA
GTCTATTGTAAAGCGCACTG

Product: rRNA (cytosine-C(5)-)-methyltransferase RsmF

Products: NA

Alternate protein names: 16S rRNA m5C1407 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmF [H]

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MIYSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFD
PIPWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ
GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS
ETQKALIESAFLALKPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGADRATTAEGFLHVWPQIYDSEG
FFVAKLTKTASVPRLLPEPKLQKNFPFTTASAKQAQGIKDYFQQDLGISLPDELIMVRDDEFWLFPHEFNAFIGRMRFQR
IGIKLADNSKHGFKVRHEAIIALAGKQLSPTAKTVDVSDVEAKEYLMGRDIPLATAGKAQGEVIVCYGGAPLGMAKHLGN
KLKNNLPRDLVKDKVLLLPEQTKSL

Sequences:

>Translated_505_residues
MIYSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFD
PIPWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ
GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS
ETQKALIESAFLALKPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGADRATTAEGFLHVWPQIYDSEG
FFVAKLTKTASVPRLLPEPKLQKNFPFTTASAKQAQGIKDYFQQDLGISLPDELIMVRDDEFWLFPHEFNAFIGRMRFQR
IGIKLADNSKHGFKVRHEAIIALAGKQLSPTAKTVDVSDVEAKEYLMGRDIPLATAGKAQGEVIVCYGGAPLGMAKHLGN
KLKNNLPRDLVKDKVLLLPEQTKSL
>Mature_505_residues
MIYSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNTLKISSDDFKTLMQPKGWTFD
PIPWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQ
GLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS
ETQKALIESAFLALKPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGADRATTAEGFLHVWPQIYDSEG
FFVAKLTKTASVPRLLPEPKLQKNFPFTTASAKQAQGIKDYFQQDLGISLPDELIMVRDDEFWLFPHEFNAFIGRMRFQR
IGIKLADNSKHGFKVRHEAIIALAGKQLSPTAKTVDVSDVEAKEYLMGRDIPLATAGKAQGEVIVCYGGAPLGMAKHLGN
KLKNNLPRDLVKDKVLLLPEQTKSL

Specific function: Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=313, Percent_Identity=32.2683706070287, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI76150623, Length=313, Percent_Identity=32.2683706070287, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI32698918, Length=301, Percent_Identity=29.2358803986711, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI39995082, Length=290, Percent_Identity=25.8620689655172, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI301336155, Length=290, Percent_Identity=25.8620689655172, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI40316918, Length=200, Percent_Identity=35, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI11545785, Length=257, Percent_Identity=31.5175097276265, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI270288818, Length=307, Percent_Identity=26.3843648208469, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI8922322, Length=307, Percent_Identity=26.3843648208469, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI23199998, Length=302, Percent_Identity=25.8278145695364, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87081985, Length=477, Percent_Identity=53.2494758909853, Blast_Score=493, Evalue=1e-140,
Organism=Escherichia coli, GI2367212, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17536757, Length=308, Percent_Identity=31.1688311688312, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI25143471, Length=203, Percent_Identity=33.4975369458128, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71998419, Length=302, Percent_Identity=24.8344370860927, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=299, Percent_Identity=32.7759197324415, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6319447, Length=230, Percent_Identity=30, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI22024126, Length=308, Percent_Identity=31.1688311688312, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI21355201, Length=202, Percent_Identity=32.6732673267327, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920494, Length=196, Percent_Identity=29.0816326530612, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24668781, Length=157, Percent_Identity=35.031847133758, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356513, Length=157, Percent_Identity=35.031847133758, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR011023 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu [H]

EC number: =2.1.1.178 [H]

Molecular weight: Translated: 56142; Mature: 56142

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNT
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHCCEEEEE
LKISSDDFKTLMQPKGWTFDPIPWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLP
EEECCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEEEHHHHCCC
PTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANV
CCEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEHHHHHH
LRMGASHCALTHFDGRVFGEYLYESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS
HHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHH
ETQKALIESAFLALKPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGAD
HHHHHHHHHHHHEECCCCCEEEEEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC
RATTAEGFLHVWPQIYDSEGFFVAKLTKTASVPRLLPEPKLQKNFPFTTASAKQAQGIKD
CCCHHCCHHEECCHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YFQQDLGISLPDELIMVRDDEFWLFPHEFNAFIGRMRFQRIGIKLADNSKHGFKVRHEAI
HHHHHCCCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHHHCEEEECCCCCCEEEHHEEE
IALAGKQLSPTAKTVDVSDVEAKEYLMGRDIPLATAGKAQGEVIVCYGGAPLGMAKHLGN
EEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCCCCEEEEECCCCHHHHHHHHH
KLKNNLPRDLVKDKVLLLPEQTKSL
HHHHCCCHHHHCCCEEEECCHHCCC
>Mature Secondary Structure
MIYSRQLIHSLFSYGSMKSMVQLNQNFIDTITQELPAHLSMDEFIAACDKPLRRSIRVNT
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHCCEEEEE
LKISSDDFKTLMQPKGWTFDPIPWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLP
EEECCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHEEEEHHHHCCC
PTALFTPSAFTTSAKWQCVLDLASAPGSKTTQMAALMQNQGLLVANEYSASRVKVLHANV
CCEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEHHHHHH
LRMGASHCALTHFDGRVFGEYLYESFDAVLIDAPCGGEGTVRKDADALKHWSLDDVLAIS
HHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHH
ETQKALIESAFLALKPGGSLVYSTCTLNRLENQGVCEYLKQVYGDAVQFESLSDLFDGAD
HHHHHHHHHHHHEECCCCCEEEEEEEHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC
RATTAEGFLHVWPQIYDSEGFFVAKLTKTASVPRLLPEPKLQKNFPFTTASAKQAQGIKD
CCCHHCCHHEECCHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YFQQDLGISLPDELIMVRDDEFWLFPHEFNAFIGRMRFQRIGIKLADNSKHGFKVRHEAI
HHHHHCCCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHHHCEEEECCCCCCEEEHHEEE
IALAGKQLSPTAKTVDVSDVEAKEYLMGRDIPLATAGKAQGEVIVCYGGAPLGMAKHLGN
EEECCCCCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCCCCEEEEECCCCHHHHHHHHH
KLKNNLPRDLVKDKVLLLPEQTKSL
HHHHCCCHHHHCCCEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA