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The map label for this gene is ydcR [C]

Identifier: 126174596

GI number: 126174596

Start: 2771593

End: 2772951

Strand: Direct

Name: ydcR [C]

Synonym: Sbal_2383

Alternate gene names: 126174596

Gene position: 2771593-2772951 (Clockwise)

Preceding gene: 126174593

Following gene: 126174598

Centisome position: 54.05

GC content: 48.34

Gene sequence:

>1359_bases
ATGAGTACAATCTGGACGCCAGACCTAACAGCTTTTTCAGGCCCGAAATATCAGCGCTTAGTCAGTGCGATAGAACAAGG
CATTTTGCAGAAGGTGTTGACCCAAGGCAGTAAACTGCCACCGCAGCGCCGTCTAGCCGATGCTTTAGGCATCACTATTG
GCACTGTAACCCGCGCCTATGCATTGGCGGAACAAAGGGGTTACGTTGAAGCACGCGTCGGTGATGGCACCTATGTCAAC
GCCTCCCCAGTACCAGAGATCGGTAACGTACAATTGAATATGGCGACCTGCCAGCAGCCACTCACAGATCAAATCAGCAC
TCTCAGTGATTGCCTCAGCCAATTAGCAAAAGACCCGACAAAGCTCAGCCAGTTACTGGGTTATCGCGCCAGTCCATTAG
ATCAACATCAACAAGTGTTTAACCAATGGCTTAACCAACGCGGCATACAACAAACGCCTGAGCAACTGATCTTTACCCAT
GGCGGCCAGCAAGCGATTTTTGCTTGTTTAAGTGCATTTTTATCAACGGGCGATGTGCTGCTGCACGAGCAATACAGTTA
TCCAGGCGTGAGAATTTGTGCTAAGCAACTCGGCGTGACCAGCATTGGTGTGCCCCTCACCCATGAAGGTGTAGATCTCG
CCCGCTTTGAGGCGTTAGTGCAAATCCATCATCCCAAGTTAGTCTATCTAACCCTGAATAATCAAAACCCTACCTGTATT
CAATACAGTGAGTCGCAGCGGCAAAAACTCCTCGAATTGGCCGAGCAGTATCAGTTTTATATCATTGAAGATGATGTGAA
TTATTGTTTACCCGAAGAGTGGCATTCGCCCCTGTGGCAATTAGCAAAACAGCTGGCTATCCCACGGGTGATTTATATTT
CTAGCCTGTCAAAATTGTTTTCTGGCGGCCTAAGGCAAGGTTTTATTCTGGTGCCTGAACCACTTATCGCCCAAGTGCGA
CTCGCGATTCATAGCCAATGCTGGATGGTATCGCCGCTGAACATTGAAATAGCCTGTCAGTTGATTAAGAAAGGCCAAAT
CACTGCCGATCGCGATACCATAGTTCGCCAACGCCAACGTCTCTGTATCGCCATGGGCGAACGACTGAAATTAACCCAAA
CTTGGCGAGGACTGAACGGTTGGCTACAACTGCCAGAAGATATCAAAGCCCATCACCTCGTCACTGCACTGGCCGCTAAA
GGCATTTTGATCCGTAATGGAGATGACTTTAATTGCCATGACAATTTTATTCGCTTGAGCCTTGGCGGCGCCGAAAACGA
CACTCAATTTCAACATGCGATTGAATGTATCGAGGCGACGATTCACTCCCTGGTACAAAATGCCTATTCAGTGGTGTAA

Upstream 100 bases:

>100_bases
GTATTCATATTCACCTTAAATTGTATGCATACATTTATTGACATAAAAAGATGCAATAAATAATATACGGAGAATATTAG
AGATCAATGGATTTATTGTC

Downstream 100 bases:

>100_bases
TCTCGCTTAAAAACCTCCGAACTCAGCCAATTTTTATGCGCCATGTCAGATGAAGTTAATTCACACTAAATAGCTAATTT
GTAAAATTAGAGAGCATAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MSTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVN
ASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFNQWLNQRGIQQTPEQLIFTH
GGQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVR
LAIHSQCWMVSPLNIEIACQLIKKGQITADRDTIVRQRQRLCIAMGERLKLTQTWRGLNGWLQLPEDIKAHHLVTALAAK
GILIRNGDDFNCHDNFIRLSLGGAENDTQFQHAIECIEATIHSLVQNAYSVV

Sequences:

>Translated_452_residues
MSTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVN
ASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFNQWLNQRGIQQTPEQLIFTH
GGQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVR
LAIHSQCWMVSPLNIEIACQLIKKGQITADRDTIVRQRQRLCIAMGERLKLTQTWRGLNGWLQLPEDIKAHHLVTALAAK
GILIRNGDDFNCHDNFIRLSLGGAENDTQFQHAIECIEATIHSLVQNAYSVV
>Mature_451_residues
STIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAYALAEQRGYVEARVGDGTYVNA
SPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPTKLSQLLGYRASPLDQHQQVFNQWLNQRGIQQTPEQLIFTHG
GQQAIFACLSAFLSTGDVLLHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCIQ
YSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLFSGGLRQGFILVPEPLIAQVRL
AIHSQCWMVSPLNIEIACQLIKKGQITADRDTIVRQRQRLCIAMGERLKLTQTWRGLNGWLQLPEDIKAHHLVTALAAKG
ILIRNGDDFNCHDNFIRLSLGGAENDTQFQHAIECIEATIHSLVQNAYSVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=332, Percent_Identity=27.1084337349398, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI33469970, Length=332, Percent_Identity=27.1084337349398, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1787710, Length=448, Percent_Identity=24.1071428571429, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1790797, Length=332, Percent_Identity=26.2048192771084, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50540; Mature: 50409

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALAEQRGYVEARVGDGTYVNASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPT
HHHHHCCCEEEEECCCCEECCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHCCHH
KLSQLLGYRASPLDQHQQVFNQWLNQRGIQQTPEQLIFTHGGQQAIFACLSAFLSTGDVL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHHHHHHHHCCCCEE
LHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEE
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLF
EECHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
SGGLRQGFILVPEPLIAQVRLAIHSQCWMVSPLNIEIACQLIKKGQITADRDTIVRQRQR
CCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
LCIAMGERLKLTQTWRGLNGWLQLPEDIKAHHLVTALAAKGILIRNGDDFNCHDNFIRLS
HHHHHCCCEEHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE
LGGAENDTQFQHAIECIEATIHSLVQNAYSVV
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STIWTPDLTAFSGPKYQRLVSAIEQGILQKVLTQGSKLPPQRRLADALGITIGTVTRAY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ALAEQRGYVEARVGDGTYVNASPVPEIGNVQLNMATCQQPLTDQISTLSDCLSQLAKDPT
HHHHHCCCEEEEECCCCEECCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHCCHH
KLSQLLGYRASPLDQHQQVFNQWLNQRGIQQTPEQLIFTHGGQQAIFACLSAFLSTGDVL
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHHHHHHHHCCCCEE
LHEQYSYPGVRICAKQLGVTSIGVPLTHEGVDLARFEALVQIHHPKLVYLTLNNQNPTCI
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEE
QYSESQRQKLLELAEQYQFYIIEDDVNYCLPEEWHSPLWQLAKQLAIPRVIYISSLSKLF
EECHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHH
SGGLRQGFILVPEPLIAQVRLAIHSQCWMVSPLNIEIACQLIKKGQITADRDTIVRQRQR
CCCCCCCEEECCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
LCIAMGERLKLTQTWRGLNGWLQLPEDIKAHHLVTALAAKGILIRNGDDFNCHDNFIRLS
HHHHHCCCEEHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEE
LGGAENDTQFQHAIECIEATIHSLVQNAYSVV
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]