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The map label for this gene is yqfA [H]

Identifier: 126174538

GI number: 126174538

Start: 2709723

End: 2710406

Strand: Direct

Name: yqfA [H]

Synonym: Sbal_2325

Alternate gene names: 126174538

Gene position: 2709723-2710406 (Clockwise)

Preceding gene: 126174532

Following gene: 126174542

Centisome position: 52.85

GC content: 43.13

Gene sequence:

>684_bases
ATGTCGAGTCAAAGTGTTATCGAACAACAAAACCCAGCTAACATCCCTGCTAAGTCTGGGCCTTATAGTATTAAAGAAGA
GATCGCTAATAGCGTATCCCATGGCTTAGGCATCATCGCAGGCATAGTGGCATTGGTACTGATGTTACTCAAAGGGCAAG
ATCATCTAATGCCAATTCAACTAACAGGCGTTGCCATTTATGGTGCGAGCATCATAGTGCTTTTTCTATGCTCGACCTTA
TACCACAGCGTTAGCCATTCAGGCTGGAAACATAAACTTAAGATCGCCGATCACTGCGCAATTTACTGCTTGATTGCAGG
AACTTACACACCTTTGATGCTGATAAGCCTACAGGGGACGCAATCGATAGTGATTTTAACAGCGATTTGGTCGCTTGCGA
TTGGTGGGATCCTATTTAAGACGCTATTTATTCACAAATTCAAAAAGTTAAGCTTAGTCTTGTATCTCGCCATGGGTTGG
CTATGTGTCACTGTGATGGGCGATTTAACGGCGGCCATGTCGGAGTTAGGTTTTAATCTATTGATCTTAGGTGGCTTGTT
TTACACCTTAGGGGTGGTGTTCTACGTCGGGAAACGTATTCCATTTAACCATGCCATTTGGCATTTGTTTGTGCTTGGCG
GTGCCATGAGTCACTTTCTGTGTATTTATCTGACTGTTATTTAA

Upstream 100 bases:

>100_bases
CCAGCCACACATTTAAGCTTACAAGTGTACGCTTAAATATGGTGATTTATTTTCCTAACTGATAGACTTAGTCATTATCG
TTTGCGAGTGTGTATCTACC

Downstream 100 bases:

>100_bases
ATGGCTATGATTTACCTGATGGTGATTTAACTGGCTATAATTTAAATGGCTATGACTTAACAGATGGTGATTTATCTGTG
AGTCAAAGCTAAAAGTCGTT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSSQSVIEQQNPANIPAKSGPYSIKEEIANSVSHGLGIIAGIVALVLMLLKGQDHLMPIQLTGVAIYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLVLYLAMGW
LCVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI

Sequences:

>Translated_227_residues
MSSQSVIEQQNPANIPAKSGPYSIKEEIANSVSHGLGIIAGIVALVLMLLKGQDHLMPIQLTGVAIYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLVLYLAMGW
LCVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
>Mature_226_residues
SSQSVIEQQNPANIPAKSGPYSIKEEIANSVSHGLGIIAGIVALVLMLLKGQDHLMPIQLTGVAIYGASIIVLFLCSTLY
HSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKKLSLVLYLAMGWL
CVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=232, Percent_Identity=34.9137931034483, Blast_Score=100, Evalue=8e-22,
Organism=Homo sapiens, GI154759275, Length=225, Percent_Identity=31.1111111111111, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI154759277, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=3e-16,
Organism=Escherichia coli, GI1789266, Length=212, Percent_Identity=52.8301886792453, Blast_Score=211, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=33.8095238095238, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24640324, Length=242, Percent_Identity=31.404958677686, Blast_Score=84, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24693; Mature: 24562

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQSVIEQQNPANIPAKSGPYSIKEEIANSVSHGLGIIAGIVALVLMLLKGQDHLMPIQ
CCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGVAIYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKKLSLVLYLAMGWLCVTVMGDLTAAMSELGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSQSVIEQQNPANIPAKSGPYSIKEEIANSVSHGLGIIAGIVALVLMLLKGQDHLMPIQ
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTGVAIYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKKLSLVLYLAMGWLCVTVMGDLTAAMSELGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]