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The map label for this gene is ykfC [H]

Identifier: 126174531

GI number: 126174531

Start: 2699890

End: 2701362

Strand: Reverse

Name: ykfC [H]

Synonym: Sbal_2317

Alternate gene names: 126174531

Gene position: 2701362-2699890 (Counterclockwise)

Preceding gene: 126174533

Following gene: 126174529

Centisome position: 52.69

GC content: 43.58

Gene sequence:

>1473_bases
ATGATGGCTTCAAACGAAGTTAGTGCACCTCCTGACAATGCTCAATGGCAATCCATTAACTGGAAGGCGGTTAAGCAACA
TGTATTAAAGCTTCAAATGCGCATTGCAAAAGCAACCCGAGAAGGTAAACACGGCAAGGCGAAAGCATTGCAGTGGATAT
TAACCCACTCTACATCAGCAAAATTGCTTGCTGTTAAAAGAGTTTCTCAAAATAAAGGCAGCAAAACACCAGGGATCGAC
GGCATTATTTGGAATAGTGATGCTCGTTGTATGACTGCGGTGAATCAACTGAGCCGGAAAGGCTATCATGCCAAACCGCT
CAGGCGTATCTACATCCCCAAGAAAAACGGCAAGCTCAGACCTTTAGGCATACCCTGCATGATAGACAGAGCGCAGCAAG
CGCTTCATCTTCTCGCCTTGGAGCCTATTTCGGAAACGGTGGCCGACCTCAATAGCTATGGCTTTCGACCTAACCGAAGC
GCAGCAGATGCAATTGCACAGTGCTTCAAATGTTTATGTATGAAACGCTCTAGCCAATGGGTTCTTGAGGGTGACATCAA
AGCTTGTTTCGATAAGATAGGTCATCAATGGCTCATCGACAACATTCAATTAGATAAACGAATGCTGAAACAATGGCTTG
GGTGCGGTTATGTTGACAAAGGATTGTTCTATAAAACAGCAGAAGGAACACCGCAAGGAGGGATAATTCCCCCTACGCTG
ATGTTGCTCACGCTGGCTGGGTTAGAACAATTGGTTAAGTCTATTGCCTGTAAAACAGGTAATAGTGTCAACTTTATCGG
ATATGCAGACGATTTTATTATCACAGGTTCTTCGAAGGAAGTGCTCGTTAATGAAATTAAGCCGCAACTAATTGGTTTTC
TACAGGAAAGGGGCTTAACACTCTCTGATGATAAAACTCACATAACTCATATCGATGATGGTTTTGACTTTCTGGGATTC
AATATCAGGAAGTACAACGGCAAACTGCTCATTAAACCGAGCAAGAGCAACGTTCTATCATTTTTGAGTAATCTACGTGA
ATTCATCAGAAAACATCCAACAATCCCCGTTAACGATTTAATCAAAATATTGAATCCGAAACTGAGAGGATGGGCGAACT
ATTATCGCCACAGTGTTGCAAAGCAAGTTTTTGGTTATGTAGGGCATCAACTTTTCTGGTTGTTATGGCGTTGGGCCGTT
AGGCGTCATCCAACTAAAAGTAAGGACTGGGTGAGGCGTAAATACTATATGAATCGCATAGGAGGATGGCAATTTCACGG
TTGGCAGAAAATCGCCAACATGGACTGCCATTTTAATCTGGTTCAGATAGCTCAAACGCTGATAAAGAGACATGTGAAAA
TCAGGAGCGCAGCCATACCTTACGACCCCGAATATGAAGCTTACTTAAGTAAGCGGAAACGGGCAAAGGAAGGTAGAAAC
TCTTGGTTCGAACCCGTCTTGGCTGCGATGTAG

Upstream 100 bases:

>100_bases
GATGCGGATACTGATTTTATCAGGCGCGAAAGCGAGCTGACTTCTAGCTGGTCTCCCGTTGCAAGATGATTTGAAGAACT
TTATTCAAGGAGAAACGCAA

Downstream 100 bases:

>100_bases
GGTGCTGGGTAACAGAATACGCCTTAGTGGAGGGGAGGCTTGAGCCGTATGCAGTGAAAGTTGCACGTACGGTTCTTAGG
AGGGCGGCACTTGGTAACAG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSAKLLAVKRVSQNKGSKTPGID
GIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRS
AADAIAQCFKCLCMKRSSQWVLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGIIPPTL
MLLTLAGLEQLVKSIACKTGNSVNFIGYADDFIITGSSKEVLVNEIKPQLIGFLQERGLTLSDDKTHITHIDDGFDFLGF
NIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDLIKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLWRWAV
RRHPTKSKDWVRRKYYMNRIGGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKRAKEGRN
SWFEPVLAAM

Sequences:

>Translated_490_residues
MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSAKLLAVKRVSQNKGSKTPGID
GIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRS
AADAIAQCFKCLCMKRSSQWVLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGIIPPTL
MLLTLAGLEQLVKSIACKTGNSVNFIGYADDFIITGSSKEVLVNEIKPQLIGFLQERGLTLSDDKTHITHIDDGFDFLGF
NIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDLIKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLWRWAV
RRHPTKSKDWVRRKYYMNRIGGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKRAKEGRN
SWFEPVLAAM
>Mature_490_residues
MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSAKLLAVKRVSQNKGSKTPGID
GIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLRPLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRS
AADAIAQCFKCLCMKRSSQWVLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGIIPPTL
MLLTLAGLEQLVKSIACKTGNSVNFIGYADDFIITGSSKEVLVNEIKPQLIGFLQERGLTLSDDKTHITHIDDGFDFLGF
NIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDLIKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLWRWAV
RRHPTKSKDWVRRKYYMNRIGGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKRAKEGRN
SWFEPVLAAM

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=350, Percent_Identity=25.7142857142857, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6226520, Length=320, Percent_Identity=28.75, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 55989; Mature: 55989

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
KLLAVKRVSQNKGSKTPGIDGIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCC
PLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRSAADAIAQCFKCLCMKRSSQW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE
VLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGIIPPTL
EEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHH
MLLTLAGLEQLVKSIACKTGNSVNFIGYADDFIITGSSKEVLVNEIKPQLIGFLQERGLT
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC
LSDDKTHITHIDDGFDFLGFNIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDL
CCCCCCEEEEECCCCHHHCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH
IKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLWRWAVRRHPTKSKDWVRRKYYMNRI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKRAKEGRN
CCCEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
SWFEPVLAAM
HHHHHHHHCC
>Mature Secondary Structure
MMASNEVSAPPDNAQWQSINWKAVKQHVLKLQMRIAKATREGKHGKAKALQWILTHSTSA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
KLLAVKRVSQNKGSKTPGIDGIIWNSDARCMTAVNQLSRKGYHAKPLRRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHEEEEECCCCCCC
PLGIPCMIDRAQQALHLLALEPISETVADLNSYGFRPNRSAADAIAQCFKCLCMKRSSQW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE
VLEGDIKACFDKIGHQWLIDNIQLDKRMLKQWLGCGYVDKGLFYKTAEGTPQGGIIPPTL
EEECCHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHH
MLLTLAGLEQLVKSIACKTGNSVNFIGYADDFIITGSSKEVLVNEIKPQLIGFLQERGLT
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC
LSDDKTHITHIDDGFDFLGFNIRKYNGKLLIKPSKSNVLSFLSNLREFIRKHPTIPVNDL
CCCCCCEEEEECCCCHHHCCEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH
IKILNPKLRGWANYYRHSVAKQVFGYVGHQLFWLLWRWAVRRHPTKSKDWVRRKYYMNRI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
GGWQFHGWQKIANMDCHFNLVQIAQTLIKRHVKIRSAAIPYDPEYEAYLSKRKRAKEGRN
CCCEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
SWFEPVLAAM
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]