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The map label for this gene is ydaL [H]

Identifier: 126174463

GI number: 126174463

Start: 2600721

End: 2601362

Strand: Reverse

Name: ydaL [H]

Synonym: Sbal_2247

Alternate gene names: 126174463

Gene position: 2601362-2600721 (Counterclockwise)

Preceding gene: 126174466

Following gene: 126174461

Centisome position: 50.73

GC content: 49.53

Gene sequence:

>642_bases
ATGATTACAAAGTGTGTTTCTGTACAAGAGTGTGAAGTAAAGGAGCTTGCCATGCTGGATGATGAATCAGCACTGTTTTT
TGAGGAAATGGCCGGAGTTGTACCACTAAAAGGCGAGATGCCTGCGGTGAGTTTCGCGCCCAAAGCGTTAACGGCAGAGC
AAATTCACAGACGCGATGCCTTACAAAGGGAAGCTTATTTAGCGTGTATGCCACTGGATTTGAAAGCGTTTGTGCAGCAA
GCGCCGGATGACATTGTCAGCTTTAAACGTGAAGGGGTACAAGGTGGCGTTTTCAAGCGGTTACGCATGGGGCAATACAG
TATCAAGATGGAGCTCGATGTGCATGCCTATCGGCTTAATCAAGCTCGCGAGGCCGTACTCAACTACTTACTGGCAGCGC
AGGCGCACGGTGAGCGGTGCGTGATGTTGATCCACGGTAAAGGTTATCAGAGCCAACCCTTTGCGGGATTACTCAAATCC
GCTGTGTGTTGTTGGTTATCACAACTGGATATGGTGCTGGCCTATCATTCGGCGAAAACTGAGCAGGGCGGCACTGGGGC
GCTGTATGTGATGTTAACTAAGTCCGAACAGTTAAAGCTTGAGAACCGTGAAGCCAATCGTAAAGGCATGGGTTTGCGTT
AG

Upstream 100 bases:

>100_bases
TAGGCACATCAGGACTAGCGGCAAAAATTTCATTACTTTATTCTAATCTGGCAATCATGGCGTCACTATAATGGAGCCGC
CCGCTGAACTAAAGCCTTGA

Downstream 100 bases:

>100_bases
ACCAAAACAGGTCCAGTATTTGATAAAAAGTATTGAATAACAAGCAGGAATAAAAATGCCCAATCTCGTTGGGCATTTTG
CTTTATGCAATTTGGCGATG

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MITKCVSVQECEVKELAMLDDESALFFEEMAGVVPLKGEMPAVSFAPKALTAEQIHRRDALQREAYLACMPLDLKAFVQQ
APDDIVSFKREGVQGGVFKRLRMGQYSIKMELDVHAYRLNQAREAVLNYLLAAQAHGERCVMLIHGKGYQSQPFAGLLKS
AVCCWLSQLDMVLAYHSAKTEQGGTGALYVMLTKSEQLKLENREANRKGMGLR

Sequences:

>Translated_213_residues
MITKCVSVQECEVKELAMLDDESALFFEEMAGVVPLKGEMPAVSFAPKALTAEQIHRRDALQREAYLACMPLDLKAFVQQ
APDDIVSFKREGVQGGVFKRLRMGQYSIKMELDVHAYRLNQAREAVLNYLLAAQAHGERCVMLIHGKGYQSQPFAGLLKS
AVCCWLSQLDMVLAYHSAKTEQGGTGALYVMLTKSEQLKLENREANRKGMGLR
>Mature_213_residues
MITKCVSVQECEVKELAMLDDESALFFEEMAGVVPLKGEMPAVSFAPKALTAEQIHRRDALQREAYLACMPLDLKAFVQQ
APDDIVSFKREGVQGGVFKRLRMGQYSIKMELDVHAYRLNQAREAVLNYLLAAQAHGERCVMLIHGKGYQSQPFAGLLKS
AVCCWLSQLDMVLAYHSAKTEQGGTGALYVMLTKSEQLKLENREANRKGMGLR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=188, Percent_Identity=35.1063829787234, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 23774; Mature: 23774

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKCVSVQECEVKELAMLDDESALFFEEMAGVVPLKGEMPAVSFAPKALTAEQIHRRDA
CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LQREAYLACMPLDLKAFVQQAPDDIVSFKREGVQGGVFKRLRMGQYSIKMELDVHAYRLN
HHHHHEEEECCCCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEEHHHHHHH
QAREAVLNYLLAAQAHGERCVMLIHGKGYQSQPFAGLLKSAVCCWLSQLDMVLAYHSAKT
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EQGGTGALYVMLTKSEQLKLENREANRKGMGLR
CCCCCEEEEEEEECCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure
MITKCVSVQECEVKELAMLDDESALFFEEMAGVVPLKGEMPAVSFAPKALTAEQIHRRDA
CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LQREAYLACMPLDLKAFVQQAPDDIVSFKREGVQGGVFKRLRMGQYSIKMELDVHAYRLN
HHHHHEEEECCCCHHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEEHHHHHHH
QAREAVLNYLLAAQAHGERCVMLIHGKGYQSQPFAGLLKSAVCCWLSQLDMVLAYHSAKT
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
EQGGTGALYVMLTKSEQLKLENREANRKGMGLR
CCCCCEEEEEEEECCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]