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The map label for this gene is ydhB [H]

Identifier: 126174384

GI number: 126174384

Start: 2509715

End: 2510617

Strand: Reverse

Name: ydhB [H]

Synonym: Sbal_2167

Alternate gene names: 126174384

Gene position: 2510617-2509715 (Counterclockwise)

Preceding gene: 126174386

Following gene: 126174383

Centisome position: 48.96

GC content: 49.83

Gene sequence:

>903_bases
ATGCTCTCAGAACAAGCGCTAGAACTCATAGATATTGTGGCTCGTGTAGGAAGTTTCACCGCGGCGGCGAATCGGCTGCA
TAAAGTGCCCTCTGCCGTGAGCTACGCGGTCAAGCAAATAGAAGAAGAACTCGGCGTCATTCTTTTCGAACGTCATCATC
GCAGCGTAACCTTAACCCCTGCGGGTGAACATTTTGTTAAGCAAGCCAGAACCTTGCTTACGCAGATGGACGAGATGAAG
CGTGGCACGCAGCGCGTAGCAAACGGTTGGCAACCGACCTTGTCCATCGCGCTGGATAATATCGTCCGTGCCGATAGGAT
CAGTGTATTGATTGCTGACTTCTACCGTCATTTCCATGATATTGAATTGATTATTCGCATTGAGGTCTTTAACGGCGTTT
GGGAAGCACTTGCCACGGGCCGCAGTGACATTGCAATTGGTGCAACAACCGCAATTCCGGTCGGCGGCGTGTACCAATAT
AAAGACATGGGCGATATTGAGTGGGCATTTTTAGTCAGCAAAAATCATCCATTAGCCAATATTGACCGTCCGCTAAGCGA
CGATGAGCTGCGCCCTTTCCCCTCGATTTGCCTAGAAGACACCTCAAGGGAAATTCCAAAACGTATGACCTGGTTGCTCG
AAAATCAACGTCGCCTCGTTGTACCCGATTGGATCCGCGCCATTAACTGTTTCCGCGAAGGTTTAGGCGTTGGTTATATG
CCAGTGCACTTAGCAAGTGTGTTTATTAAAGCGGGTGCGCTGGTTGAGAAACAGCTAGAAAATCCTAAGCAGACCAGTCC
ATGCTGTCTCGCGTGGAATGCCGACAAGATGTCGCCTGCGCTCGCTTGGGTGCTGGAATATCTGGGCGATACTGAAAAAT
TGCATAAAGAGTGGCTGGCTTAA

Upstream 100 bases:

>100_bases
GATTGACTAAAGCGTGCAGTCTAATGACTTGTTAAATCTATTGGAAACGTTTATTTTTGACTTGTGCTATCAATTATTTT
CATTGGAACGGACGTCAGCT

Downstream 100 bases:

>100_bases
GCTTGGTTTAAACTCAATATGTTGATCTAGTCCTTATACTTGGCATTGAAATTAGCATTGGACTTGTCTTTGAAATAGGC
ATTGAAATTAACATTGAACT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVILFERHHRSVTLTPAGEHFVKQARTLLTQMDEMK
RGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFHDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQY
KDMGDIEWAFLVSKNHPLANIDRPLSDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PVHLASVFIKAGALVEKQLENPKQTSPCCLAWNADKMSPALAWVLEYLGDTEKLHKEWLA

Sequences:

>Translated_300_residues
MLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVILFERHHRSVTLTPAGEHFVKQARTLLTQMDEMK
RGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFHDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQY
KDMGDIEWAFLVSKNHPLANIDRPLSDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PVHLASVFIKAGALVEKQLENPKQTSPCCLAWNADKMSPALAWVLEYLGDTEKLHKEWLA
>Mature_300_residues
MLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVILFERHHRSVTLTPAGEHFVKQARTLLTQMDEMK
RGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFHDIELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQY
KDMGDIEWAFLVSKNHPLANIDRPLSDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
PVHLASVFIKAGALVEKQLENPKQTSPCCLAWNADKMSPALAWVLEYLGDTEKLHKEWLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=55.5183946488294, Blast_Score=356, Evalue=1e-100,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=32.280701754386, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=33.6996336996337, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=30.6859205776173, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789492, Length=286, Percent_Identity=31.4685314685315, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787806, Length=160, Percent_Identity=28.75, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=32.3353293413174, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790262, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=222, Percent_Identity=24.7747747747748, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33864; Mature: 33864

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVILFERHHRSVTLTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECC
AGEHFVKQARTLLTQMDEMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFHD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQYKDMGDIEWAFLVSKNHPLAN
EEEEEEEEHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCC
IDRPLSDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCHH
PVHLASVFIKAGALVEKQLENPKQTSPCCLAWNADKMSPALAWVLEYLGDTEKLHKEWLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MLSEQALELIDIVARVGSFTAAANRLHKVPSAVSYAVKQIEEELGVILFERHHRSVTLTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECC
AGEHFVKQARTLLTQMDEMKRGTQRVANGWQPTLSIALDNIVRADRISVLIADFYRHFHD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IELIIRIEVFNGVWEALATGRSDIAIGATTAIPVGGVYQYKDMGDIEWAFLVSKNHPLAN
EEEEEEEEHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCC
IDRPLSDDELRPFPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGVGYM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCHH
PVHLASVFIKAGALVEKQLENPKQTSPCCLAWNADKMSPALAWVLEYLGDTEKLHKEWLA
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]