Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 126174162

GI number: 126174162

Start: 2251872

End: 2252750

Strand: Direct

Name: yddE [C]

Synonym: Sbal_1937

Alternate gene names: 126174162

Gene position: 2251872-2252750 (Clockwise)

Preceding gene: 126174160

Following gene: 126174163

Centisome position: 43.92

GC content: 47.33

Gene sequence:

>879_bases
ATGTCTCAAGTCGAATTTCGCCAGGTGGATGTTTTTACATCCGAGCCGTTTAAAGGAAACCCAGTTGCTGTTGTGATGGA
TGCTAGGGAATTAAATAGTCGTCAAATGCAGGTTATCGCTCGATGGACCAATCTATCGGAAACAACATTTGTTCTACCAG
CTACCGATCCCAATGCAGACTACCAGTTACGAATTTTTACGCCGGGTGGAGAGCTTCCCTTTGCTGGCCATCCAACGATT
GGTAGTGCCTATGCTTTGATTGAAGCGGGTATTGTGCAAGCTAAAAATGGCACCCTCGTCCAGCAATGCAAAGCAGGGTT
AATCTCACTGGCTGTTTCAGAAAATGAACAGGGACAAATCGCGATTGCGTTTGAACTTCCTGAGCCAAACTTTACGCTTC
TAACATCAGAACAAACGGAGAGTCTGGAAACTATCTTGGGCTGTCAGATTAGCTGTGGATTCACACCGTATTTGGTGGAT
GTTGGTGCGCGCTGGATCGTTGCTCAGACAGACGACGCGGAGCAGGTACTCAATACGACTCCCGATTACGCAGCGTTGAA
GCAACATGACTTGTCATTCAACGCAACCGGAGTATGCCTCTACGGCTACTACCCTGAGAGCGAGTTTACTCGTATTGAAG
TTCGCTCGTTTGCGCCAACATGCGATGTGAATGAAGACCCCGTTTGTGGCAGCGGAAATGGTGCAGTTGCTGCATTTATC
AGACGTCATAATCTCAGCCTGCCAATTGACGGAAAAATTCAATCCACTCAAGGCCAAAAACTCCATCGTGACGGACAGTT
GCAACTGACCATTACGTCAGATGCTATTTGGGTCGGAGGTCAGGCAGTAACCTGTGTTTCTGGATATCTAACTTACTAA

Upstream 100 bases:

>100_bases
TTAATTGTGTCCATAAAGATTGATAAATACTGAGTCTGTTACCATTGCGTTGAGGGCGATAATATTGACTGAGTTCAAGT
GACTCATTAAGGATAGGTTT

Downstream 100 bases:

>100_bases
TATTCAGCGGAAAATAGGTCTGAGAGGTCGTTGTGTCGCACTTAACAATTACGAAAGATAAATTAATGATATGTCTATTT
TTTATCATTCCTCCGTTGCT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSQVEFRQVDVFTSEPFKGNPVAVVMDARELNSRQMQVIARWTNLSETTFVLPATDPNADYQLRIFTPGGELPFAGHPTI
GSAYALIEAGIVQAKNGTLVQQCKAGLISLAVSENEQGQIAIAFELPEPNFTLLTSEQTESLETILGCQISCGFTPYLVD
VGARWIVAQTDDAEQVLNTTPDYAALKQHDLSFNATGVCLYGYYPESEFTRIEVRSFAPTCDVNEDPVCGSGNGAVAAFI
RRHNLSLPIDGKIQSTQGQKLHRDGQLQLTITSDAIWVGGQAVTCVSGYLTY

Sequences:

>Translated_292_residues
MSQVEFRQVDVFTSEPFKGNPVAVVMDARELNSRQMQVIARWTNLSETTFVLPATDPNADYQLRIFTPGGELPFAGHPTI
GSAYALIEAGIVQAKNGTLVQQCKAGLISLAVSENEQGQIAIAFELPEPNFTLLTSEQTESLETILGCQISCGFTPYLVD
VGARWIVAQTDDAEQVLNTTPDYAALKQHDLSFNATGVCLYGYYPESEFTRIEVRSFAPTCDVNEDPVCGSGNGAVAAFI
RRHNLSLPIDGKIQSTQGQKLHRDGQLQLTITSDAIWVGGQAVTCVSGYLTY
>Mature_291_residues
SQVEFRQVDVFTSEPFKGNPVAVVMDARELNSRQMQVIARWTNLSETTFVLPATDPNADYQLRIFTPGGELPFAGHPTIG
SAYALIEAGIVQAKNGTLVQQCKAGLISLAVSENEQGQIAIAFELPEPNFTLLTSEQTESLETILGCQISCGFTPYLVDV
GARWIVAQTDDAEQVLNTTPDYAALKQHDLSFNATGVCLYGYYPESEFTRIEVRSFAPTCDVNEDPVCGSGNGAVAAFIR
RHNLSLPIDGKIQSTQGQKLHRDGQLQLTITSDAIWVGGQAVTCVSGYLTY

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=272, Percent_Identity=31.25, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6321818, Length=301, Percent_Identity=38.5382059800665, Blast_Score=199, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31749; Mature: 31618

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVEFRQVDVFTSEPFKGNPVAVVMDARELNSRQMQVIARWTNLSETTFVLPATDPNAD
CCCCCEEEEEEEECCCCCCCCEEEEEECHHCCCCEEEEEEEECCCCCEEEEEECCCCCCC
YQLRIFTPGGELPFAGHPTIGSAYALIEAGIVQAKNGTLVQQCKAGLISLAVSENEQGQI
EEEEEECCCCCCCCCCCCCCCCHHHEEECCEEEECCCCHHHHHHCCEEEEEECCCCCCCE
AIAFELPEPNFTLLTSEQTESLETILGCQISCGFTPYLVDVGARWIVAQTDDAEQVLNTT
EEEEECCCCCEEEEECCCHHHHHHHHCCEEECCCCEEEEECCCEEEEEECCCHHHHHHCC
PDYAALKQHDLSFNATGVCLYGYYPESEFTRIEVRSFAPTCDVNEDPVCGSGNGAVAAFI
CCHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
RRHNLSLPIDGKIQSTQGQKLHRDGQLQLTITSDAIWVGGQAVTCVSGYLTY
ECCCCCCCCCCCEECCCCCEECCCCEEEEEEECCEEEECCEEEEEEEEEECC
>Mature Secondary Structure 
SQVEFRQVDVFTSEPFKGNPVAVVMDARELNSRQMQVIARWTNLSETTFVLPATDPNAD
CCCCEEEEEEEECCCCCCCCEEEEEECHHCCCCEEEEEEEECCCCCEEEEEECCCCCCC
YQLRIFTPGGELPFAGHPTIGSAYALIEAGIVQAKNGTLVQQCKAGLISLAVSENEQGQI
EEEEEECCCCCCCCCCCCCCCCHHHEEECCEEEECCCCHHHHHHCCEEEEEECCCCCCCE
AIAFELPEPNFTLLTSEQTESLETILGCQISCGFTPYLVDVGARWIVAQTDDAEQVLNTT
EEEEECCCCCEEEEECCCHHHHHHHHCCEEECCCCEEEEECCCEEEEEECCCHHHHHHCC
PDYAALKQHDLSFNATGVCLYGYYPESEFTRIEVRSFAPTCDVNEDPVCGSGNGAVAAFI
CCHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
RRHNLSLPIDGKIQSTQGQKLHRDGQLQLTITSDAIWVGGQAVTCVSGYLTY
ECCCCCCCCCCCEECCCCCEECCCCEEEEEEECCEEEECCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]