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The map label for this gene is intR [H]

Identifier: 126174153

GI number: 126174153

Start: 2242799

End: 2244073

Strand: Reverse

Name: intR [H]

Synonym: Sbal_1927

Alternate gene names: 126174153

Gene position: 2244073-2242799 (Counterclockwise)

Preceding gene: 126174154

Following gene: 126174152

Centisome position: 43.77

GC content: 36.16

Gene sequence:

>1275_bases
GTGAAACAATTTCCTTTAAATACAGTGCAACTAACACCTGCTGAAGCAAAAGGGGTAATAAATCAGCATCAAATTAAAAA
TATTGAAGTACATGGTAATTCGTTAAGAGCTGTGTTTAAACGACAAAACAGGACTTATAAACAAACACTGTATGTGGGCC
TTACATCTCTAGAAATTGTTTCCGTGATATCTAAGTTAGATGGATGGCGGAAGTTATCGCCAGCCGAGTTGGAACTCGCG
TTCGCTAATTATAAAAGAAATAATACCAAATTCCCTTTAACTATTAATGACTTAATAGAAAACTATACAAAAAACCACTA
TCCCACCTTGGCTCCCGCTACAGTCAAAAGCTATAAAGGTCACTTTAAGCGTATCTCATTGGCTATTGGTGAAAAAAATA
TACTTGAAATTAACTCAAATGATGTCTTTAAGTTTCGTAACGAACAATTATCTACGTTGGCATGGAAAACAGTGAATGAG
ACGATCAGGCTGCTGGATACACTTTTACAAAATGCCGTCGACAACGGTGATTTAGTAAAGTCGCCGATCAATTTACGAAG
AATGAAAATTAAGCAGGGTCATGGCGATAGCACAATCACTGAAAAATTATTCACGATCGAGGATCTTAACAAAATTCAGG
ATAGTATTTCTATTAACCCAATGATTGCACTTATTATATTGTTCAATTGTTGCGCAGGGCTCAGGTTTTCAGAGCTAATG
GGTTTATCTTGGGAGGATATTGATTTAGAAAAAAGAATTATTACCATCCGCAGAGCGAGAGTAGATGGAAAATATAAAAC
CTTAAAAGTAAGAGGCGTCGAATCTCGTCAAGTCGATATTTTAAATCCTGCGCTTTGGATGCTGAATGAAATGAAGAAAA
GGTTCTATGAACTATCACCTCAACAAACAATCAAGACTCTTGGTGCGGATTATAAACAAATCAAACAAGAAAATGTCCGA
TTCGTCTTGCTATGTATGGATACACAAACAAGCTATCAAAACGAACAGAAATTTAGAAAGGATTTTTATCATTTTCTGAA
GGTTATCAACGTCAGCAAGACAAAACCAAACCATTGCCGACACACTTTTACATCCTTAGCATGTAATGAAGGTGCTAATC
AAACGTACATTTCAAAACAACTCGGCCATGCAAGCGTCTTAACAACAGAGAAACACTATCTTAAATGGAATAAATCTCCA
AACAAAGTAGAACGAGATAGCGCATCCCAAAAGATAAATTCTATTTTTGAACGGTTCACAACCGCTCAAGGGTAA

Upstream 100 bases:

>100_bases
TGCTGATTAAAGGGATTCATTACAAGAAATTCGATGGTACGAATATGTTTCACTACGAAGCAATTGACGTATTAATCAAT
GAACAAGGGAATTAAGCACA

Downstream 100 bases:

>100_bases
CTATAGAGCTGCTTACATTAGATAAAATAAGCATGCCAATATCCAGCATTATTAAGGTTCTAAAAAATCACCGGAACAAT
GCTGGTTTCAACATTTCAAC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKQFPLNTVQLTPAEAKGVINQHQIKNIEVHGNSLRAVFKRQNRTYKQTLYVGLTSLEIVSVISKLDGWRKLSPAELELA
FANYKRNNTKFPLTINDLIENYTKNHYPTLAPATVKSYKGHFKRISLAIGEKNILEINSNDVFKFRNEQLSTLAWKTVNE
TIRLLDTLLQNAVDNGDLVKSPINLRRMKIKQGHGDSTITEKLFTIEDLNKIQDSISINPMIALIILFNCCAGLRFSELM
GLSWEDIDLEKRIITIRRARVDGKYKTLKVRGVESRQVDILNPALWMLNEMKKRFYELSPQQTIKTLGADYKQIKQENVR
FVLLCMDTQTSYQNEQKFRKDFYHFLKVINVSKTKPNHCRHTFTSLACNEGANQTYISKQLGHASVLTTEKHYLKWNKSP
NKVERDSASQKINSIFERFTTAQG

Sequences:

>Translated_424_residues
MKQFPLNTVQLTPAEAKGVINQHQIKNIEVHGNSLRAVFKRQNRTYKQTLYVGLTSLEIVSVISKLDGWRKLSPAELELA
FANYKRNNTKFPLTINDLIENYTKNHYPTLAPATVKSYKGHFKRISLAIGEKNILEINSNDVFKFRNEQLSTLAWKTVNE
TIRLLDTLLQNAVDNGDLVKSPINLRRMKIKQGHGDSTITEKLFTIEDLNKIQDSISINPMIALIILFNCCAGLRFSELM
GLSWEDIDLEKRIITIRRARVDGKYKTLKVRGVESRQVDILNPALWMLNEMKKRFYELSPQQTIKTLGADYKQIKQENVR
FVLLCMDTQTSYQNEQKFRKDFYHFLKVINVSKTKPNHCRHTFTSLACNEGANQTYISKQLGHASVLTTEKHYLKWNKSP
NKVERDSASQKINSIFERFTTAQG
>Mature_424_residues
MKQFPLNTVQLTPAEAKGVINQHQIKNIEVHGNSLRAVFKRQNRTYKQTLYVGLTSLEIVSVISKLDGWRKLSPAELELA
FANYKRNNTKFPLTINDLIENYTKNHYPTLAPATVKSYKGHFKRISLAIGEKNILEINSNDVFKFRNEQLSTLAWKTVNE
TIRLLDTLLQNAVDNGDLVKSPINLRRMKIKQGHGDSTITEKLFTIEDLNKIQDSISINPMIALIILFNCCAGLRFSELM
GLSWEDIDLEKRIITIRRARVDGKYKTLKVRGVESRQVDILNPALWMLNEMKKRFYELSPQQTIKTLGADYKQIKQENVR
FVLLCMDTQTSYQNEQKFRKDFYHFLKVINVSKTKPNHCRHTFTSLACNEGANQTYISKQLGHASVLTTEKHYLKWNKSP
NKVERDSASQKINSIFERFTTAQG

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=411, Percent_Identity=26.2773722627737, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48933; Mature: 48933

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFPLNTVQLTPAEAKGVINQHQIKNIEVHGNSLRAVFKRQNRTYKQTLYVGLTSLEIV
CCCCCCCEEEECCHHHHCCCCHHHEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
SVISKLDGWRKLSPAELELAFANYKRNNTKFPLTINDLIENYTKNHYPTLAPATVKSYKG
HHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHCC
HFKRISLAIGEKNILEINSNDVFKFRNEQLSTLAWKTVNETIRLLDTLLQNAVDNGDLVK
HHEEEEEEECCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
SPINLRRMKIKQGHGDSTITEKLFTIEDLNKIQDSISINPMIALIILFNCCAGLRFSELM
CCCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
GLSWEDIDLEKRIITIRRARVDGKYKTLKVRGVESRQVDILNPALWMLNEMKKRFYELSP
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHHCCH
QQTIKTLGADYKQIKQENVRFVLLCMDTQTSYQNEQKFRKDFYHFLKVINVSKTKPNHCR
HHHHHHHCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
HTFTSLACNEGANQTYISKQLGHASVLTTEKHYLKWNKSPNKVERDSASQKINSIFERFT
HHHHHHHHCCCCCCHHHHHHCCCHHEEECCHHHEEECCCCCHHHHHHHHHHHHHHHHHHH
TAQG
CCCC
>Mature Secondary Structure
MKQFPLNTVQLTPAEAKGVINQHQIKNIEVHGNSLRAVFKRQNRTYKQTLYVGLTSLEIV
CCCCCCCEEEECCHHHHCCCCHHHEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
SVISKLDGWRKLSPAELELAFANYKRNNTKFPLTINDLIENYTKNHYPTLAPATVKSYKG
HHHHHCCCCCCCCCHHEEEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHCC
HFKRISLAIGEKNILEINSNDVFKFRNEQLSTLAWKTVNETIRLLDTLLQNAVDNGDLVK
HHEEEEEEECCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
SPINLRRMKIKQGHGDSTITEKLFTIEDLNKIQDSISINPMIALIILFNCCAGLRFSELM
CCCHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
GLSWEDIDLEKRIITIRRARVDGKYKTLKVRGVESRQVDILNPALWMLNEMKKRFYELSP
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCEECCCHHHHHHHHHHHHHHHCCH
QQTIKTLGADYKQIKQENVRFVLLCMDTQTSYQNEQKFRKDFYHFLKVINVSKTKPNHCR
HHHHHHHCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
HTFTSLACNEGANQTYISKQLGHASVLTTEKHYLKWNKSPNKVERDSASQKINSIFERFT
HHHHHHHHCCCCCCHHHHHHCCCHHEEECCHHHEEECCCCCHHHHHHHHHHHHHHHHHHH
TAQG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]