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The map label for this gene is ydaM [H]

Identifier: 126174071

GI number: 126174071

Start: 2144181

End: 2145206

Strand: Reverse

Name: ydaM [H]

Synonym: Sbal_1845

Alternate gene names: 126174071

Gene position: 2145206-2144181 (Counterclockwise)

Preceding gene: 126174073

Following gene: 126174066

Centisome position: 41.84

GC content: 48.25

Gene sequence:

>1026_bases
ATGTCGCTAGAGTTATTACAAGCCGCTGCACTGAATCTCAAAAAAGCAGTGCCTCTGATGCTCAAACATAAAATTCCGAC
CACCCCGGTTAACTATGCGCTTTGGTACACTTATGTTGGTGAACAGAATCCTGAATTAAATCAACGACTCGATACCGTTA
TCGCCCAGTACAACACTTGTCCTCCTGTGAGTAGCGAACTCTTATATCGCCAGTATGTTGCCGATCCCGTTGAACTCGAT
GTCCGCGAAATGCGCCAGAATCTGGATGCTATGGTGACTGAGCGGTCCCAATCGCTCAAAGATACCAATCTGGATGCCAA
TGAATTCCAGTCGCGCATCGAGAGTAATTTTGAAAAGCTCAACCGCATCGAAGATGAGGGTTTTAGTGTTGAGCAAGTGC
TCGATCTGGTGCGCAGTTTAGTGAAAGAGTCGGACAATATTCGCTCGAGCACTGAGTTCTTTACCGGACAATTGCAGAAA
GCGCAAACCGAAATCGATGCGCTAAAGAAAAAGCTCGAACAGACAGAAAAAGATGTGCTCTACGATGCGCTGACTGGCTG
CTTTAATCGCCGCGCCTTCGACAGCGATTTTGCCGGCATGTTGGCCCAAGCGCCCTTAGGCACCAGCTTGATCTTGGCCG
ATATCGACCATTTTAAAGTGTTTAACGACACCTACGGCCACCAGCTCGGCGACCAAGTGTTACGCGCCGTGGCGAAACGG
CTGCAGGAATCCTGCCGCGATGGCGCGAAACTGTATCGTTTTGGCGGTGAAGAATTTGTGATTATTGTGCCTAAAAGTCA
GTTACGCATCGCAAGGCAACTGGCCGAAGCCATGCGCCGTGGACTCGAAAAGCTCAGTTTGAAAGACAGACGTAAAGACG
AGCGCATCAATAATATCAGTGCCTCATTTGGGGTTGCCCAATGGCAAGAAAAACAAACGGGCATGCAATTAATTGAAGCG
GCAGATAAATTACTTTATGACGCTAAACGTTTAGGTCGAAATCGCGTGTTACCGATCAGCAACTAA

Upstream 100 bases:

>100_bases
GAACCGACGATGCTTGCGGTTAGTCTTGAACAGATAACAACAGAATAAAATAGCGAAAATCTTAAAATATCCGTTTATTT
TCATTAAGTAAGGTAACAAT

Downstream 100 bases:

>100_bases
TTGTGATGACCTGAGAGTAATTACATGAGAGTCATGACCGAAACGCAATGAATTAGCCTGAAGCCGATGATTCGGCTTCA
GGCTAAAGTTATTTAGTGAA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTERSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKR
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEA
ADKLLYDAKRLGRNRVLPISN

Sequences:

>Translated_341_residues
MSLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTERSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKR
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEA
ADKLLYDAKRLGRNRVLPISN
>Mature_340_residues
SLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELDV
REMRQNLDAMVTERSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKA
QTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKRL
QESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEAA
DKLLYDAKRLGRNRVLPISN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=37.8531073446328, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=40.7407407407407, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=34.6938775510204, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=35.4430379746835, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=39.0532544378698, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787056, Length=170, Percent_Identity=35.2941176470588, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=132, Percent_Identity=34.0909090909091, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=33.1325301204819, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=29.4797687861272, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=29.1925465838509, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38911; Mature: 38780

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
PPVSSELLYRQYVADPVELDVREMRQNLDAMVTERSQSLKDTNLDANEFQSRIESNFEKL
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
NRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVL
HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCFNRRAFDSDFAGMLAQAPLGTSLILADIDHFKVFNDTYGHQLGDQVLRAVAKR
HHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNIS
HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]