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The map label for this gene is ydjA [H]

Identifier: 126174035

GI number: 126174035

Start: 2102035

End: 2102583

Strand: Direct

Name: ydjA [H]

Synonym: Sbal_1808

Alternate gene names: 126174035

Gene position: 2102035-2102583 (Clockwise)

Preceding gene: 126174034

Following gene: 126174036

Centisome position: 41.0

GC content: 50.46

Gene sequence:

>549_bases
TTGGACGCTATTGAACTTTTGCTCACCCGTCAATCGACCCCGCGATTAATCGCTCCCGCTCCCGATGCGAGTCAATTAAA
AATCATCTTAGATGCTGCCATTCGTGTGCCAGATCATGGTGCCTTAGCCCCATGGGAATTTATTATTGCCACTGACCAAG
GGTTAAACACCTTAGCCGATATCTTTGTTGAGGCGGCTAAAGCGAGTGGCGCCGATGAGGATTTCGTTAATAAAGCTAAG
GGCATGCCAATGCGAGCACCTATGGTGATTACCGTGGTGGCGAAAACGCAGCAACATCCTAAAGTGCCAGTACTTGAACA
ACAAATTGCAGCGGGCTGCGCAACGATGGCGATGCAACAGGCGGCTTTTGCCTTAGGTATAGGTGCTGTATGGCGAACGG
GTGATTTTGCCTTCGATGCCAATGTGAATGCCGCCTTAGGCCTTGAGCCACACGATCAAATCGTCGGCTTTTTGTATGTC
GGTACGCCAGCGGTTGTGGCACCCCAAAAACCGCAAAAGGACGGCAGCCAATACGTCCGTTATTTATGA

Upstream 100 bases:

>100_bases
CAAAGCGTTAAATCCCACCCATGCGGTGGGATTTTTTTATGCCTCTTTGCCAGCAATTTGCTATGCTTGAACGCAATTTA
TATCGAACTAGGATAAGAAC

Downstream 100 bases:

>100_bases
AAAATAGTTTATAAAAAATAGTTTATAAAAAAGTTTAAAAACATTTTAAAAAAAATTGTCTATTTCTAGTGGAGAAATCC
TATGCAAGTGGCGCGTACTC

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDAIELLLTRQSTPRLIAPAPDASQLKIILDAAIRVPDHGALAPWEFIIATDQGLNTLADIFVEAAKASGADEDFVNKAK
GMPMRAPMVITVVAKTQQHPKVPVLEQQIAAGCATMAMQQAAFALGIGAVWRTGDFAFDANVNAALGLEPHDQIVGFLYV
GTPAVVAPQKPQKDGSQYVRYL

Sequences:

>Translated_182_residues
MDAIELLLTRQSTPRLIAPAPDASQLKIILDAAIRVPDHGALAPWEFIIATDQGLNTLADIFVEAAKASGADEDFVNKAK
GMPMRAPMVITVVAKTQQHPKVPVLEQQIAAGCATMAMQQAAFALGIGAVWRTGDFAFDANVNAALGLEPHDQIVGFLYV
GTPAVVAPQKPQKDGSQYVRYL
>Mature_182_residues
MDAIELLLTRQSTPRLIAPAPDASQLKIILDAAIRVPDHGALAPWEFIIATDQGLNTLADIFVEAAKASGADEDFVNKAK
GMPMRAPMVITVVAKTQQHPKVPVLEQQIAAGCATMAMQQAAFALGIGAVWRTGDFAFDANVNAALGLEPHDQIVGFLYV
GTPAVVAPQKPQKDGSQYVRYL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=167, Percent_Identity=46.1077844311377, Blast_Score=165, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 19404; Mature: 19404

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIELLLTRQSTPRLIAPAPDASQLKIILDAAIRVPDHGALAPWEFIIATDQGLNTLAD
CCHHHEEEECCCCCCEEECCCCHHHEEEEEEEHEECCCCCCCCCEEEEEECCCCHHHHHH
IFVEAAKASGADEDFVNKAKGMPMRAPMVITVVAKTQQHPKVPVLEQQIAAGCATMAMQQ
HHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
AAFALGIGAVWRTGDFAFDANVNAALGLEPHDQIVGFLYVGTPAVVAPQKPQKDGSQYVR
HHHHHHHCCEEECCCEEEECCCCEEECCCCHHHEEEEEEECCCEEECCCCCCCCHHHHHH
YL
CC
>Mature Secondary Structure
MDAIELLLTRQSTPRLIAPAPDASQLKIILDAAIRVPDHGALAPWEFIIATDQGLNTLAD
CCHHHEEEECCCCCCEEECCCCHHHEEEEEEEHEECCCCCCCCCEEEEEECCCCHHHHHH
IFVEAAKASGADEDFVNKAKGMPMRAPMVITVVAKTQQHPKVPVLEQQIAAGCATMAMQQ
HHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
AAFALGIGAVWRTGDFAFDANVNAALGLEPHDQIVGFLYVGTPAVVAPQKPQKDGSQYVR
HHHHHHHCCEEECCCEEEECCCCEEECCCCHHHEEEEEEECCCEEECCCCCCCCHHHHHH
YL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]