Click here to switch to the map view.

The map label for this gene is yceD [H]

Identifier: 126173943

GI number: 126173943

Start: 1995454

End: 1995978

Strand: Direct

Name: yceD [H]

Synonym: Sbal_1714

Alternate gene names: 126173943

Gene position: 1995454-1995978 (Clockwise)

Preceding gene: 126173941

Following gene: 126173944

Centisome position: 38.92

GC content: 46.86

Gene sequence:

>525_bases
ATGCAAACAGTAAAGATACCGGTTTCAATTGATCCATTTCGCGCCGCCTCGAGTCGCCTAGTTTATCAGGGCGTTGTTCC
TGGTGTGCAATTGAAAAGATTAAATGAGTTATGTGCCGGCGACTGTTCCGATGTGGCAGTGTCGCTTGAATGTGGCGTAG
ATTTACAGGGGATAGTCTACCTGAAAGGGAAGGCTGTGACGGAGCTCACTCTGATATGTCAACGTTGCATGACGCTATTT
ACCACTGAGGTTACGGTCGAGTTTTGCTTCGGTCCATGCCGGACTAAGGCAGAAATCGATGAGCTCCCGGATGCGTATGA
CCCAATTGAGTGCAATGAAATTGGCGAAGTGCGTCTACATCAATTGATCGAAGATGAATTGATAGTCGCTATGCCGATAA
TCCCAATGCATCAAGAAATTGATTGCAGTGCTGGATCTAAAGACATGGTTGTAGGCGAGATCGAACCCGCTCATGAGGAG
CGTCCAAATCCGTTTGCAGTGTTAGAAAAACTGAAGAGCAAGTAA

Upstream 100 bases:

>100_bases
TCAATGTTGGGGCTGGAGAAAGGCTTAAGTCGCAAACTGGGACTTAAGTTAGAATTTTTTCTTTGACTCTAGCGTTTTCA
AACTATAATATGCGCGCCTT

Downstream 100 bases:

>100_bases
TCTAGGAGACAGGCCAATGGCTGTACAACAGAACAAAAAATCACGTTCAAAGCGCGGAATGCGCCGTTCACATGACGCAC
TGAGCACTGCTCAGCTGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQTVKIPVSIDPFRAASSRLVYQGVVPGVQLKRLNELCAGDCSDVAVSLECGVDLQGIVYLKGKAVTELTLICQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHQEIDCSAGSKDMVVGEIEPAHEE
RPNPFAVLEKLKSK

Sequences:

>Translated_174_residues
MQTVKIPVSIDPFRAASSRLVYQGVVPGVQLKRLNELCAGDCSDVAVSLECGVDLQGIVYLKGKAVTELTLICQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHQEIDCSAGSKDMVVGEIEPAHEE
RPNPFAVLEKLKSK
>Mature_174_residues
MQTVKIPVSIDPFRAASSRLVYQGVVPGVQLKRLNELCAGDCSDVAVSLECGVDLQGIVYLKGKAVTELTLICQRCMTLF
TTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLHQLIEDELIVAMPIIPMHQEIDCSAGSKDMVVGEIEPAHEE
RPNPFAVLEKLKSK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=174, Percent_Identity=43.6781609195402, Blast_Score=155, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19193; Mature: 19193

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVKIPVSIDPFRAASSRLVYQGVVPGVQLKRLNELCAGDCSDVAVSLECGVDLQGIVY
CCEEEEEEECCCCHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEE
LKGKAVTELTLICQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH
ECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
QLIEDELIVAMPIIPMHQEIDCSAGSKDMVVGEIEPAHEERPNPFAVLEKLKSK
HHHHCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MQTVKIPVSIDPFRAASSRLVYQGVVPGVQLKRLNELCAGDCSDVAVSLECGVDLQGIVY
CCEEEEEEECCCCHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEE
LKGKAVTELTLICQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH
ECCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
QLIEDELIVAMPIIPMHQEIDCSAGSKDMVVGEIEPAHEERPNPFAVLEKLKSK
HHHHCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]