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The map label for this gene is nrdD [H]

Identifier: 126173897

GI number: 126173897

Start: 1944612

End: 1946729

Strand: Direct

Name: nrdD [H]

Synonym: Sbal_1665

Alternate gene names: 126173897

Gene position: 1944612-1946729 (Clockwise)

Preceding gene: 126173896

Following gene: 126173898

Centisome position: 37.93

GC content: 46.98

Gene sequence:

>2118_bases
ATGCCAGTCGTAATTAAGCGTGATGGTTGCCGCACACCTTTTGATGAAACAAGGATACGGGATGCAGTGAATGCCGCTGC
AAACTCAGTTGGAATAGAGGATGGCGACTATGCAGCGACAGTGGCAGCGTGTATCAGTCAAAGCGTTGCGACCTTAACCG
AAGTTGATATCCATCATCTACAGGATGCGGTTGAGAATTTACTGATGGAAGGGCCGTATAAGTCCTTGGCGCGGGTTTAT
ATCGAATACCGTCACGACCGAGATGTGTGCCGTGAAGCGACCAGTAAATTAAACCTCGAAATCCGTGGTTTAGTCGAGCA
AAGTAATGCGGCGTTACTCAATGAAAATGCCAATAAAGATTCGAAAGTTATCCCAACTCAGCGAGATTTACTCGCGGGCA
TAGTCGCCAAGCATTATGCCAAGAGTCATATCTTGCCAAAGGATGTGGTTGCTGCCCATGAAGCGGGGGAGATCCACTAC
CACGATTTAGATTACTCGCCTTTTTTCCCGATGTTTAACTGTATGCTGATTGATTTGGCAGGCATGTTGACCCATGGCTT
TAAAATGGGCAATGCCGAAATCGAAACCCCTAAGTCTATCTCAACGGCGACAGCCGTCACCGCGCAGATCATTGCCCAAG
TGGCGAGCCATATTTATGGCGGCACGACCATCAATCGCATCGACGAAGTGTTAGCGCCATTTGTCGCTAAGAGCTACGAC
AAGCACTACCAAATCGCCCTGAATTGGCAGATCACCGACGCCAAAGCCTTTGCCACGGCGCAAACTGAAAAAGAATGTCA
CGATGCATTTCAGTCTTTGGAATATGAGGTTAATACCTTGCATACCGCCAATGGCCAAACACCGTTCGTTACCTTTGGCT
TTGGGTTAGGCACATCATGGGAATCCCGCTTAATTCAGCAATCTATGCTGAAAGTACGGATGGCGGGATTAGGTAAAAAT
CGTAAGACGGCAGTTTTTCCTAAGTTAGTGTTTGCGATTCGTGATGGCATTAATCACAAAGCTGGCGATTGCAATTACGA
TGTCAAACAGATGGCACTCAAATGCGCAACTATGCGCATGTATCCCGACATTCTCAATTACGAGCAAGTCGAGAAAGTCA
CAGGTTCATTTAAAACCCCAATGGGCTGCCGCAGCTTTTTAGGCACCTACGAGGAAAATGGCGAACTCGTGCATGAAGGA
CGTAATAATCTTGGGGTCGTTAGTTTAAATCTGCCGCGGATTGCTTTAGAAGCCAAGGGCGATGAAGCTGAATTTTATCG
TATTTTAGATGACAGATTAATCTTAGCTCGTAAAGCGCTGGATACCCGTATTGAGCGACTTAATGGCGTTAAAGCCCGCG
TGGCACCAATCCTCTATATGGAAGGCGCCTGTGGTGTGCGCTTGCGTGCCGATGATGATGTCTCTCAAATTTTTAAAAAT
GGTCGCGCGTCAATTTCACTCGGTTACATTGGCCTGCATGAAACCATGAATGCACTCTATGGCACCCAAACCCATGTATT
TGACGATGCACAATTAAGGGACAAAGCCGTCGCTATTGTTGCCTATCTTAAAGCCGCCACGGATGCGTGGAAGGCTGAAA
CAGGTTATGGCTTTAGTCTGTATAGCACGCCAAGTGAGAGTCTCTGCAGCCGTTTTTGTAAACTGGATGCGAAGCAATTT
GGCCTAGTCACAGGCGTGACAGACAAGGGCTATTACACTAATAGTTTCCACCTTGATGTGGAAAAAAGCGTTAACCCCTA
CGATAAAATTGATTTTGAACAGCCATATCCCGCAATTGCGAATGGCGGCTTTATTTGTTATGGCGAATATCCCAACATGC
AGCATAACCTCGAAGCGTTGGAAAACGTGTGGGATTATAGTTATAGCCGCGTGCCTTACTATGGCACTAACACGCCAATT
GATGAATGCTACGACTGTGGCTTTACTGGCGAATTTAGCTGTACCAGTAAAGGGTTCACTTGCCCTAAGTGCGGCAACCA
TGAGCCAAGTCGAGTGTCAGTGACGCGCCGAGTGTGCGGTTACTTAGGCAGCCCAGATGCGCGGCCTTTTAATTATGGTA
AACAGGAAGAAGTAAAACGTAGGATCAAACACTTGTAA

Upstream 100 bases:

>100_bases
CACCGTCGTTGTAGCCTAATGCTCTACATATTGTGTTTTATGCTTTTAAAATCACTAGATGTAGTGTTAATTTTTAGGCG
AGATGGAGAGGAACTGAACA

Downstream 100 bases:

>100_bases
CACTATTATTTTATTCTGCTTGTTAGACTTATTCCGTGGCATCACGTGGCATCACTTGGCATCAAATCAAATAGTGCCAT
GGGATAAGTCCCAATGTTAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPVVIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACISQSVATLTEVDIHHLQDAVENLLMEGPYKSLARVY
IEYRHDRDVCREATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHEAGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQIALNWQITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMAGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCATMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTYEENGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDDRLILARKALDTRIERLNGVKARVAPILYMEGACGVRLRADDDVSQIFKN
GRASISLGYIGLHETMNALYGTQTHVFDDAQLRDKAVAIVAYLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDAKQF
GLVTGVTDKGYYTNSFHLDVEKSVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNLEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRIKHL

Sequences:

>Translated_705_residues
MPVVIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACISQSVATLTEVDIHHLQDAVENLLMEGPYKSLARVY
IEYRHDRDVCREATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHEAGEIHY
HDLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQIALNWQITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMAGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCATMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTYEENGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDDRLILARKALDTRIERLNGVKARVAPILYMEGACGVRLRADDDVSQIFKN
GRASISLGYIGLHETMNALYGTQTHVFDDAQLRDKAVAIVAYLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDAKQF
GLVTGVTDKGYYTNSFHLDVEKSVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNLEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRIKHL
>Mature_704_residues
PVVIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACISQSVATLTEVDIHHLQDAVENLLMEGPYKSLARVYI
EYRHDRDVCREATSKLNLEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHEAGEIHYH
DLDYSPFFPMFNCMLIDLAGMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYDK
HYQIALNWQITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMLKVRMAGLGKNR
KTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCATMRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTYEENGELVHEGR
NNLGVVSLNLPRIALEAKGDEAEFYRILDDRLILARKALDTRIERLNGVKARVAPILYMEGACGVRLRADDDVSQIFKNG
RASISLGYIGLHETMNALYGTQTHVFDDAQLRDKAVAIVAYLKAATDAWKAETGYGFSLYSTPSESLCSRFCKLDAKQFG
LVTGVTDKGYYTNSFHLDVEKSVNPYDKIDFEQPYPAIANGGFICYGEYPNMQHNLEALENVWDYSYSRVPYYGTNTPID
ECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRIKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=78.7234042553192, Blast_Score=1189, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 78540; Mature: 78409

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACISQSVATLTEVDIHHL
CCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEHCCCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHEAGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
GMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQIALNWQITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMLKVRMAGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCATMRM
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YPDILNYEQVEKVTGSFKTPMGCRSFLGTYEENGELVHEGRNNLGVVSLNLPRIALEAKG
HHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCEEEEECCC
DEAEFYRILDDRLILARKALDTRIERLNGVKARVAPILYMEGACGVRLRADDDVSQIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCCCCEEEECCCHHHHHHHC
GRASISLGYIGLHETMNALYGTQTHVFDDAQLRDKAVAIVAYLKAATDAWKAETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YSTPSESLCSRFCKLDAKQFGLVTGVTDKGYYTNSFHLDVEKSVNPYDKIDFEQPYPAIA
ECCCHHHHHHHHHHCCHHHHCEEEECCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCCC
NGGFICYGEYPNMQHNLEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRIKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PVVIKRDGCRTPFDETRIRDAVNAAANSVGIEDGDYAATVAACISQSVATLTEVDIHHL
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QDAVENLLMEGPYKSLARVYIEYRHDRDVCREATSKLNLEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEHCCCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKSHILPKDVVAAHEAGEIHYHDLDYSPFFPMFNCMLIDLA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
GMLTHGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQIALNWQITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMLKVRMAGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDVKQMALKCATMRM
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YPDILNYEQVEKVTGSFKTPMGCRSFLGTYEENGELVHEGRNNLGVVSLNLPRIALEAKG
HHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCEEEEECCC
DEAEFYRILDDRLILARKALDTRIERLNGVKARVAPILYMEGACGVRLRADDDVSQIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEECCCCCEEEECCCHHHHHHHC
GRASISLGYIGLHETMNALYGTQTHVFDDAQLRDKAVAIVAYLKAATDAWKAETGYGFSL
CCCEEEEEEEEHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YSTPSESLCSRFCKLDAKQFGLVTGVTDKGYYTNSFHLDVEKSVNPYDKIDFEQPYPAIA
ECCCHHHHHHHHHHCCHHHHCEEEECCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCCC
NGGFICYGEYPNMQHNLEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRIKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]