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The map label for this gene is yebA [H]

Identifier: 126173888

GI number: 126173888

Start: 1935766

End: 1937067

Strand: Direct

Name: yebA [H]

Synonym: Sbal_1656

Alternate gene names: 126173888

Gene position: 1935766-1937067 (Clockwise)

Preceding gene: 126173887

Following gene: 126173893

Centisome position: 37.75

GC content: 41.63

Gene sequence:

>1302_bases
TTGCAGACAGGCAAACCCAACTTTATCAACTTATCGCAAACCCGTTTGCAGAACTTATCATCGACCCAAAAAAACATTCT
ATTAATGGGTGGTTTGTTGATTGGCGCTGCTATGCTAATGCCGAATAATGGTCATGTTGTGCCAACTGCTCAGCGTATCC
CAGTTGTCCTCGATATTGAAAATATTCTCCCCCAAGTTTCTGAACCTGAAGTCCAAGATCAAGCAACCCTTATTAATAAC
GCTCCACAGTTTGAGCGAATTATCGTTTCTGGTGATACCTTAAGTGGGTTATTTTCGAAAGCGGGTGTTGATCAGCAGAC
CATGTATAAGGTGTTAGAAGCTGATTTAAATATTTTGGCACTTGATACCTTATTGCCTGGTAACAGAATGCAATTTTGGC
TCGATAACGAAGGCAAATTACAGAAATTAGAACTTTATTTTAACGCTGCTCGCCAAGTGGTGTTTACACGCTATGAAGAC
GGCAGTTTTAATGTTGAAGAAGTCAACGTTGAAGGCGTTTGGCAAAATCGTATTATATCTGGCGATATTAAAGGCTCATT
TTACGTCTCTGCACAAAAAATGGGTTTAGCTGCGGCAGACATTCAGCGGATTGAAGATTTACTCAAAGAAAAATTGAATT
TCGCCCGTGATTTACGCGTTGGCGATAAATTCTCTGTTTTGGTAAATGATCAATATGTTGAAGGTGAAGCGACGGGTAGT
AGCCAAATTTTAGGCGTGAGTATTAAAACCGGTCGTTCTGAAATTAGTGCATTTCAATATACTGACGGCAGTTATTACGA
TGCCAAGGGCCAGAGTTTAGTACGTGCGTTCCAGCGTTATCCATTAGCTAAACAACCCCGCATGAGTTCTCGTTTTAATC
CATATCGTAAACATCCAATTACTGGCCGTATTTCACCCCATAACGGAACCGACTTTTCAGTGCCAATAGGCACTAAAGTG
ATTGCTCCTGGTGATGGTGTTGTTAGTTTAGTGACTGACCATCAGTTCGCTGGTAAGTATATTGTGATTGACCACGGTGG
TAAGTATCGTACCCGTTACCTGCATTTATCTAAGGCGCTTGTGCGTAAAGGTCAGCGAGTGACTCGAGGCCAAGTGATTG
CTTTATCTGGTAATACTGGTCGCTCAACGGGTCCACACTTACATTATGAATTCCATATCAATGGTAAACCTGTTGACCCG
TTAAAAGCGGATATTCCTATGTCTAGCAAGTTAGCGAATCAAGACTTACGCACATTTACCAATATGGTGAAGAGTCGTGA
AGCTATGATGAACCTTGGCTAA

Upstream 100 bases:

>100_bases
GTCATAATGGGATTTTTGGGATAAGTTGGAAAAAATTCGGGCTTCCCTCATAGGGACTGGTTCAAAAATAAAACGCAAAG
TTAACGAAAGGTGAAAAGCG

Downstream 100 bases:

>100_bases
TAGAACTAAGTCTCGCCAAGTCTGAATAAACGATAGTGCTGGCTTTTCTTGAAGAGTTTACCAATGCCGATGAAATGTAA
ATTTCATCGGCATTTTTGTT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MQTGKPNFINLSQTRLQNLSSTQKNILLMGGLLIGAAMLMPNNGHVVPTAQRIPVVLDIENILPQVSEPEVQDQATLINN
APQFERIIVSGDTLSGLFSKAGVDQQTMYKVLEADLNILALDTLLPGNRMQFWLDNEGKLQKLELYFNAARQVVFTRYED
GSFNVEEVNVEGVWQNRIISGDIKGSFYVSAQKMGLAAADIQRIEDLLKEKLNFARDLRVGDKFSVLVNDQYVEGEATGS
SQILGVSIKTGRSEISAFQYTDGSYYDAKGQSLVRAFQRYPLAKQPRMSSRFNPYRKHPITGRISPHNGTDFSVPIGTKV
IAPGDGVVSLVTDHQFAGKYIVIDHGGKYRTRYLHLSKALVRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHINGKPVDP
LKADIPMSSKLANQDLRTFTNMVKSREAMMNLG

Sequences:

>Translated_433_residues
MQTGKPNFINLSQTRLQNLSSTQKNILLMGGLLIGAAMLMPNNGHVVPTAQRIPVVLDIENILPQVSEPEVQDQATLINN
APQFERIIVSGDTLSGLFSKAGVDQQTMYKVLEADLNILALDTLLPGNRMQFWLDNEGKLQKLELYFNAARQVVFTRYED
GSFNVEEVNVEGVWQNRIISGDIKGSFYVSAQKMGLAAADIQRIEDLLKEKLNFARDLRVGDKFSVLVNDQYVEGEATGS
SQILGVSIKTGRSEISAFQYTDGSYYDAKGQSLVRAFQRYPLAKQPRMSSRFNPYRKHPITGRISPHNGTDFSVPIGTKV
IAPGDGVVSLVTDHQFAGKYIVIDHGGKYRTRYLHLSKALVRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHINGKPVDP
LKADIPMSSKLANQDLRTFTNMVKSREAMMNLG
>Mature_433_residues
MQTGKPNFINLSQTRLQNLSSTQKNILLMGGLLIGAAMLMPNNGHVVPTAQRIPVVLDIENILPQVSEPEVQDQATLINN
APQFERIIVSGDTLSGLFSKAGVDQQTMYKVLEADLNILALDTLLPGNRMQFWLDNEGKLQKLELYFNAARQVVFTRYED
GSFNVEEVNVEGVWQNRIISGDIKGSFYVSAQKMGLAAADIQRIEDLLKEKLNFARDLRVGDKFSVLVNDQYVEGEATGS
SQILGVSIKTGRSEISAFQYTDGSYYDAKGQSLVRAFQRYPLAKQPRMSSRFNPYRKHPITGRISPHNGTDFSVPIGTKV
IAPGDGVVSLVTDHQFAGKYIVIDHGGKYRTRYLHLSKALVRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHINGKPVDP
LKADIPMSSKLANQDLRTFTNMVKSREAMMNLG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=381, Percent_Identity=38.0577427821522, Blast_Score=261, Evalue=5e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48042; Mature: 48042

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGKPNFINLSQTRLQNLSSTQKNILLMGGLLIGAAMLMPNNGHVVPTAQRIPVVLDIE
CCCCCCCEEECHHHHHHHHCCCCCCEEEECHHHHHHEEEECCCCCEEECCCCCEEEEEHH
NILPQVSEPEVQDQATLINNAPQFERIIVSGDTLSGLFSKAGVDQQTMYKVLEADLNILA
HHCCCCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCCEEE
LDTLLPGNRMQFWLDNEGKLQKLELYFNAARQVVFTRYEDGSFNVEEVNVEGVWQNRIIS
EEEECCCCCEEEEECCCCCEEEEEEEHHHHCEEEEEEECCCCCCEEEEEEEEEEECCEEE
GDIKGSFYVSAQKMGLAAADIQRIEDLLKEKLNFARDLRVGDKFSVLVNDQYVEGEATGS
CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCC
SQILGVSIKTGRSEISAFQYTDGSYYDAKGQSLVRAFQRYPLAKQPRMSSRFNPYRKHPI
CEEEEEEEECCCCCCCEEEECCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC
TGRISPHNGTDFSVPIGTKVIAPGDGVVSLVTDHQFAGKYIVIDHGGKYRTRYLHLSKAL
CEEECCCCCCEEEECCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEEHHHHHH
VRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHINGKPVDPLKADIPMSSKLANQDLRTFT
HHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NMVKSREAMMNLG
HHHHHHHHHHCCC
>Mature Secondary Structure
MQTGKPNFINLSQTRLQNLSSTQKNILLMGGLLIGAAMLMPNNGHVVPTAQRIPVVLDIE
CCCCCCCEEECHHHHHHHHCCCCCCEEEECHHHHHHEEEECCCCCEEECCCCCEEEEEHH
NILPQVSEPEVQDQATLINNAPQFERIIVSGDTLSGLFSKAGVDQQTMYKVLEADLNILA
HHCCCCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCCEEE
LDTLLPGNRMQFWLDNEGKLQKLELYFNAARQVVFTRYEDGSFNVEEVNVEGVWQNRIIS
EEEECCCCCEEEEECCCCCEEEEEEEHHHHCEEEEEEECCCCCCEEEEEEEEEEECCEEE
GDIKGSFYVSAQKMGLAAADIQRIEDLLKEKLNFARDLRVGDKFSVLVNDQYVEGEATGS
CCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCC
SQILGVSIKTGRSEISAFQYTDGSYYDAKGQSLVRAFQRYPLAKQPRMSSRFNPYRKHPI
CEEEEEEEECCCCCCCEEEECCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCC
TGRISPHNGTDFSVPIGTKVIAPGDGVVSLVTDHQFAGKYIVIDHGGKYRTRYLHLSKAL
CEEECCCCCCEEEECCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCEEEEEEHHHHHH
VRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHINGKPVDPLKADIPMSSKLANQDLRTFT
HHCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NMVKSREAMMNLG
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]