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The map label for this gene is raiA [H]

Identifier: 126173459

GI number: 126173459

Start: 1405399

End: 1405755

Strand: Reverse

Name: raiA [H]

Synonym: Sbal_1221

Alternate gene names: 126173459

Gene position: 1405755-1405399 (Counterclockwise)

Preceding gene: 126173461

Following gene: 126173458

Centisome position: 27.42

GC content: 40.62

Gene sequence:

>357_bases
ATGCTAAAGATTACTAGCAAGCAACTTGAAGTCACATCTCCTATTCGCGAACGTATTGAAAGCCGTTTCGAAAAACTTTC
AAGGCATGATGTGCAAATGATAAATCCCCATGTAATCATTACGGAGGAGAAACCTGGTTTCAAAATTGAAGCATCGGTTG
GCATCCCAAATGGAGAACTCTTCGCTCAAGCAAAACATGAAAATTTATATACTGCGATTAACGCTATGGGCCAAAAATTA
GAGAAGCAGCTCAATCGCATAACACACAAACCGGAAGCACAACGTTCCACATCATTAACACCGACTAATAATATTGTTGA
AGTTGACGACGAGTACGAGGAGGAAGATGCGGCATAA

Upstream 100 bases:

>100_bases
CGAACAGTAACTAACCGGCACAAAAATGTGATCTAGATCTCGTTTTATAGTGCAGACCTTGGTAATCTGAAATCCAAGGA
AACAACAGAAGGTTCGAAAT

Downstream 100 bases:

>100_bases
TTTAAGTTTAGTGAGTGCGAGAAACGCATCACTTTGAGAGCAATAAAGTAGAAATATTTAATCAGATCACAGTTTTTACA
AAAGCTTAGTGCAATCATTT

Product: sigma 54 modulation protein/ribosomal protein S30EA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLKITSKQLEVTSPIRERIESRFEKLSRHDVQMINPHVIITEEKPGFKIEASVGIPNGELFAQAKHENLYTAINAMGQKL
EKQLNRITHKPEAQRSTSLTPTNNIVEVDDEYEEEDAA

Sequences:

>Translated_118_residues
MLKITSKQLEVTSPIRERIESRFEKLSRHDVQMINPHVIITEEKPGFKIEASVGIPNGELFAQAKHENLYTAINAMGQKL
EKQLNRITHKPEAQRSTSLTPTNNIVEVDDEYEEEDAA
>Mature_118_residues
MLKITSKQLEVTSPIRERIESRFEKLSRHDVQMINPHVIITEEKPGFKIEASVGIPNGELFAQAKHENLYTAINAMGQKL
EKQLNRITHKPEAQRSTSLTPTNNIVEVDDEYEEEDAA

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=111, Percent_Identity=45.945945945946, Blast_Score=107, Evalue=2e-25,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13455; Mature: 13455

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKITSKQLEVTSPIRERIESRFEKLSRHDVQMINPHVIITEEKPGFKIEASVGIPNGEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCEEEEEECCCCCCHH
FAQAKHENLYTAINAMGQKLEKQLNRITHKPEAQRSTSLTPTNNIVEVDDEYEEEDAA
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MLKITSKQLEVTSPIRERIESRFEKLSRHDVQMINPHVIITEEKPGFKIEASVGIPNGEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCEEEEEECCCCCCHH
FAQAKHENLYTAINAMGQKLEKQLNRITHKPEAQRSTSLTPTNNIVEVDDEYEEEDAA
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]