| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is 126173290
Identifier: 126173290
GI number: 126173290
Start: 1204351
End: 1206717
Strand: Reverse
Name: 126173290
Synonym: Sbal_1046
Alternate gene names: NA
Gene position: 1206717-1204351 (Counterclockwise)
Preceding gene: 126173293
Following gene: 126173289
Centisome position: 23.53
GC content: 44.06
Gene sequence:
>2367_bases ATGACACAAATACATGAAATCAATGCTCTGAAAAAATATGTCAGAGCGACTAACTTTCTTGCGACCTCGCAGATTTATCT CAAACAAAACGTCTTACATAAACGTCCACTTGCCCATACTGATATCAAACCACGTTTACTTGGCCACTGGGGTACCTGCC CCGGCATTAACTTTGTTTATGCCAACATTAACCGATTGATAGTGAAACATAATCGCTCGTTCATCTATTTAGTTGGTCCT GGTCATGGTTTCCCAGCAGTACAAGCTAACTTATTCATGGAAGGTTCATTAAGTCATTTCTATCCAGAAACGATCCCCTA CAATGAAACCGGTATCGAAGATATTTGTAAGAAGTTTTCCGCCGCTTATGGCTATCCTTCACATGCAAACCCAGAAGCTC CAGGACAAATTCTTGAAGGTGGCGAACTAGGCTACTCACTTTCTGTTGGCTGGGGTGCAGTACTCGATAATCCAGATCTG ATCGCCACCGTCTTAATTGGTGACGGTGAAGCAGAAACCGGACCATTAGCCGCGTCTTGGTACGCAAACCGTCTAGTCTC TCCTGCGACAAGTGGTGCAGTATTACCGATTGTGCATATCAATGGCTATAAAATTTCAGGCCCTACCCGCATGGGACGCA TGAGTCATGAAGAACTGGATCTTGAATTCCGTGGTCTTGGCTACTTCCCAATTATCGTTGATAACGAATTAGAAGAAGAT ATCTATGTGCAGATGACGAATGCCATGGATACCGCTTATGCCATGATCAATGATATCCAACGTCGTGCCCGTAGCAGTGA AGATGTAGTTAAGCCTAAATGGCCAGTGATTTTAATGCGCACCGCCAAAGGTTGGACCGGTGTCAGTGAGTATAAAGGTA AGAAATTAGAAGGTAACTGTGAATCACACCAAGTGATCGTCAATAAATGTGCCACAGATAAAGGTCATCTGGATGCACTC GACAATTGGCTTGCCAGTTACAACTTCCAAGAACTTTACCAAATGAATGATAAAGGCGAGCTGATTTTTGATGCCGACAT TTGCTCATTAATTCCACCTAAGCAACTTGCCTGTGGTCGTCAACATCTCACCTATGGTGGTGAAGTGGTTAGAGCGTTAA CGAACCCTGATCTCGAAAAACTCAGCTACGGTCCAGAAGTACCACGTGGTCACCGTGGTTATTCAATGTTGAAAATGGGT GAATGGATGCGTGATGCATTCAAGCTAAACCGCGATCAACGCAATCTACGTATTTTTAGCCCTGACGAAACCTATTCAAA TCAACTACAAGCCGTATTTGAAGAAACCGATCGTGCATGGCAATGGCCAATTGAGAGCTGGGATGAAGACATGTCCCGCG AAGGACGAGTGATTGAGCTCCTTTCTGAAAACTTGCTCTTTGGTATGTTGCACGGCTACACAGTAACAGGCCGCCACGGC ATGTTCCCTACGTATGAATCATTCTCACAAGTGATCTCATCGATGGCCGACCAATACTGTAAATACGTCTATGCAAGCCA AGGCGTGCATTTCCGTAAGCCACTGCCTTCATGTAACGTCGTATTATCTTCGCTGCTTGAACGCCAAGACCATAATGGCT ACTCGCATCAAAACCCGTCTTTCCTTGGGGCTATGCTAGAGAAGCATCCAAAAATTATCTCTGCTTATTTACCAGCAGAT GCTAACAGCACCTTGGTTTATACCGAACGGGCTTACGCCGACCGCGACAAACTCAATATTCTTGTTGCTGGTAAGAAAGA GTTACCACAATGGTTGAGCTTGGAAGAAGCGCGTAAACAAGCAAAAGATGGCGTGATGGTGTGGGATTTCGCCTCTGATG AGAATCCAGATATTGTGCTGGCAGGTTGTGGTGATTACGTCACTCAAGAGTGCATGGCCTCATTAGTATTGATCAGAGAA CTCCTTCCAAGAGTCAAAATTCGCTTCGTTAGCGTCACCGAATTAAGCAGTGATGGCTTAGGAAGCCGCAAATTTAAAGA AAAACCTTGGTTAATGGACGAAATATTTACCCAAGATAAAGGCGTGGTATTCAATTACCATGGTTACCCAAATACGATTA AAAAGTTAATATTTGATTACAAAGGCAGCCGTCGCTTCAGAATTAAAGGCTATGAAGAAGAAGGTTCAACAACCACTCCA TTCGATATGGGCGTTCGTAACGGCACATCACGTTATCACCTAGTGATTGATATGGCTTACAAACTGTTCCAACAGGGCGT TATTGATGAAACTATGCACGTTTCCATCACCACTGACATGCTGCAAAGACTAGTTGACCACCGCAACTATATTAAAGCGA ATGGTGTCGACCCAATAGAAATTGAGAATTGGATATGGACACGTTAA
Upstream 100 bases:
>100_bases TTAAAATTTGGATGTAGGGCACATTTTTGTAATAAAACTACAAATATAGTATCCACATAGAAACTTCAATCATCTCTTGT TTGTTTTAGTGAGGCTTTAT
Downstream 100 bases:
>100_bases CAATCACACAAAATTAACATAACAGTTCATTTTAAGGGCATTCCTCGGAGTGCCTTTTTTACGTTAAAATGCAATTTACA GAATGAATGCTTATAAAAAG
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MTQIHEINALKKYVRATNFLATSQIYLKQNVLHKRPLAHTDIKPRLLGHWGTCPGINFVYANINRLIVKHNRSFIYLVGP GHGFPAVQANLFMEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGWGAVLDNPDL IATVLIGDGEAETGPLAASWYANRLVSPATSGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYFPIIVDNELEED IYVQMTNAMDTAYAMINDIQRRARSSEDVVKPKWPVILMRTAKGWTGVSEYKGKKLEGNCESHQVIVNKCATDKGHLDAL DNWLASYNFQELYQMNDKGELIFDADICSLIPPKQLACGRQHLTYGGEVVRALTNPDLEKLSYGPEVPRGHRGYSMLKMG EWMRDAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDEDMSREGRVIELLSENLLFGMLHGYTVTGRHG MFPTYESFSQVISSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD ANSTLVYTERAYADRDKLNILVAGKKELPQWLSLEEARKQAKDGVMVWDFASDENPDIVLAGCGDYVTQECMASLVLIRE LLPRVKIRFVSVTELSSDGLGSRKFKEKPWLMDEIFTQDKGVVFNYHGYPNTIKKLIFDYKGSRRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQGVIDETMHVSITTDMLQRLVDHRNYIKANGVDPIEIENWIWTR
Sequences:
>Translated_788_residues MTQIHEINALKKYVRATNFLATSQIYLKQNVLHKRPLAHTDIKPRLLGHWGTCPGINFVYANINRLIVKHNRSFIYLVGP GHGFPAVQANLFMEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGWGAVLDNPDL IATVLIGDGEAETGPLAASWYANRLVSPATSGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYFPIIVDNELEED IYVQMTNAMDTAYAMINDIQRRARSSEDVVKPKWPVILMRTAKGWTGVSEYKGKKLEGNCESHQVIVNKCATDKGHLDAL DNWLASYNFQELYQMNDKGELIFDADICSLIPPKQLACGRQHLTYGGEVVRALTNPDLEKLSYGPEVPRGHRGYSMLKMG EWMRDAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDEDMSREGRVIELLSENLLFGMLHGYTVTGRHG MFPTYESFSQVISSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPAD ANSTLVYTERAYADRDKLNILVAGKKELPQWLSLEEARKQAKDGVMVWDFASDENPDIVLAGCGDYVTQECMASLVLIRE LLPRVKIRFVSVTELSSDGLGSRKFKEKPWLMDEIFTQDKGVVFNYHGYPNTIKKLIFDYKGSRRFRIKGYEEEGSTTTP FDMGVRNGTSRYHLVIDMAYKLFQQGVIDETMHVSITTDMLQRLVDHRNYIKANGVDPIEIENWIWTR >Mature_787_residues TQIHEINALKKYVRATNFLATSQIYLKQNVLHKRPLAHTDIKPRLLGHWGTCPGINFVYANINRLIVKHNRSFIYLVGPG HGFPAVQANLFMEGSLSHFYPETIPYNETGIEDICKKFSAAYGYPSHANPEAPGQILEGGELGYSLSVGWGAVLDNPDLI ATVLIGDGEAETGPLAASWYANRLVSPATSGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYFPIIVDNELEEDI YVQMTNAMDTAYAMINDIQRRARSSEDVVKPKWPVILMRTAKGWTGVSEYKGKKLEGNCESHQVIVNKCATDKGHLDALD NWLASYNFQELYQMNDKGELIFDADICSLIPPKQLACGRQHLTYGGEVVRALTNPDLEKLSYGPEVPRGHRGYSMLKMGE WMRDAFKLNRDQRNLRIFSPDETYSNQLQAVFEETDRAWQWPIESWDEDMSREGRVIELLSENLLFGMLHGYTVTGRHGM FPTYESFSQVISSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPSFLGAMLEKHPKIISAYLPADA NSTLVYTERAYADRDKLNILVAGKKELPQWLSLEEARKQAKDGVMVWDFASDENPDIVLAGCGDYVTQECMASLVLIREL LPRVKIRFVSVTELSSDGLGSRKFKEKPWLMDEIFTQDKGVVFNYHGYPNTIKKLIFDYKGSRRFRIKGYEEEGSTTTPF DMGVRNGTSRYHLVIDMAYKLFQQGVIDETMHVSITTDMLQRLVDHRNYIKANGVDPIEIENWIWTR
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 89420; Mature: 89289
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQIHEINALKKYVRATNFLATSQIYLKQNVLHKRPLAHTDIKPRLLGHWGTCPGINFVY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCEEEE ANINRLIVKHNRSFIYLVGPGHGFPAVQANLFMEGSLSHFYPETIPYNETGIEDICKKFS ECCEEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVGWGAVLDNPDLIATVLIGDGEAETGPLAASW HHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCCCEEHHH YANRLVSPATSGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYFPIIVDNELEED HHHHHCCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCEEEEEEECCCCCCC IYVQMTNAMDTAYAMINDIQRRARSSEDVVKPKWPVILMRTAKGWTGVSEYKGKKLEGNC EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCC ESHQVIVNKCATDKGHLDALDNWLASYNFQELYQMNDKGELIFDADICSLIPPKQLACGR CCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEECCCHHHCCCCHHHHCCC QHLTYGGEVVRALTNPDLEKLSYGPEVPRGHRGYSMLKMGEWMRDAFKLNRDQRNLRIFS HHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETDRAWQWPIESWDEDMSREGRVIELLSENLLFGMLHGYTVTGRHG CCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCEEHHHHHHHHHHHHCCEEEECCCC MFPTYESFSQVISSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADANSTLVYTERAYADRDKLNILVAGKKELPQWLSLEEARKQ HHHHHHHHCCCEEEEECCCCCCCEEEEEEHHHCCCCCEEEEEECCCCCHHHCCHHHHHHH AKDGVMVWDFASDENPDIVLAGCGDYVTQECMASLVLIRELLPRVKIRFVSVTELSSDGL HHCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCC GSRKFKEKPWLMDEIFTQDKGVVFNYHGYPNTIKKLIFDYKGSRRFRIKGYEEEGSTTTP CCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQGVIDETMHVSITTDMLQRLVDHRNYIKANGVDPIE HHCCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCEE IENWIWTR ECCCCCCC >Mature Secondary Structure TQIHEINALKKYVRATNFLATSQIYLKQNVLHKRPLAHTDIKPRLLGHWGTCPGINFVY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCEEEE ANINRLIVKHNRSFIYLVGPGHGFPAVQANLFMEGSLSHFYPETIPYNETGIEDICKKFS ECCEEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHH AAYGYPSHANPEAPGQILEGGELGYSLSVGWGAVLDNPDLIATVLIGDGEAETGPLAASW HHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCEEEEEEEECCCCCCCCEEHHH YANRLVSPATSGAVLPIVHINGYKISGPTRMGRMSHEELDLEFRGLGYFPIIVDNELEED HHHHHCCCCCCCCEEEEEEECCEEECCCCHHCCCCCHHCCEEEECCEEEEEEECCCCCCC IYVQMTNAMDTAYAMINDIQRRARSSEDVVKPKWPVILMRTAKGWTGVSEYKGKKLEGNC EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCCC ESHQVIVNKCATDKGHLDALDNWLASYNFQELYQMNDKGELIFDADICSLIPPKQLACGR CCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCEEECCCHHHCCCCHHHHCCC QHLTYGGEVVRALTNPDLEKLSYGPEVPRGHRGYSMLKMGEWMRDAFKLNRDQRNLRIFS HHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC PDETYSNQLQAVFEETDRAWQWPIESWDEDMSREGRVIELLSENLLFGMLHGYTVTGRHG CCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHCCCCEEHHHHHHHHHHHHCCEEEECCCC MFPTYESFSQVISSMADQYCKYVYASQGVHFRKPLPSCNVVLSSLLERQDHNGYSHQNPS CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCHH FLGAMLEKHPKIISAYLPADANSTLVYTERAYADRDKLNILVAGKKELPQWLSLEEARKQ HHHHHHHHCCCEEEEECCCCCCCEEEEEEHHHCCCCCEEEEEECCCCCHHHCCHHHHHHH AKDGVMVWDFASDENPDIVLAGCGDYVTQECMASLVLIRELLPRVKIRFVSVTELSSDGL HHCCEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCC GSRKFKEKPWLMDEIFTQDKGVVFNYHGYPNTIKKLIFDYKGSRRFRIKGYEEEGSTTTP CCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC FDMGVRNGTSRYHLVIDMAYKLFQQGVIDETMHVSITTDMLQRLVDHRNYIKANGVDPIE HHCCCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCCEEECCCCCCEE IENWIWTR ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]