| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is tal [H]
Identifier: 126173288
GI number: 126173288
Start: 1201796
End: 1202752
Strand: Reverse
Name: tal [H]
Synonym: Sbal_1044
Alternate gene names: 126173288
Gene position: 1202752-1201796 (Counterclockwise)
Preceding gene: 126173289
Following gene: 126173287
Centisome position: 23.46
GC content: 44.72
Gene sequence:
>957_bases ATGGCCAATACATTAGAGCAACTCAAGTTATATACCACTATCGTCGCTGACACAGGCGACATCGAAGCGATTAAACGCTA CCAACCTGAAGATGCGACAACCAATCCATCGCTCATCTTAAAAGCGGCTCAAATTCCTGAATACGAATCCCTCATAGATA ACGCTATCGACTGGGCAAAATCACAAAGTGCCAATCTCGCACAGCAACTTGATGATGCCAGCGACAAGCTCGCCGTTAAT ATCGGTGTAGAAATACTGAAACTCGTTCCTGGTCGTATCTCTACTGAAGTTGATGCCCGTTTATCATTCGATAAAGAACA ATCAATAGCTAAAGCCCATAAGCTGGTTCGCCTCTACCAAGAAGCGGGCGTTGATAAGTCACGCATTCTGATCAAACTCG CTTCAACTTGGGAAGGCATTTGTGCAGCTAGAGAGCTGGAGAAAGAAGGTATCAACTGTAACTTAACCCTACTATTTAGC TTTGCCCAAGCACGTGCTTGTGCCGAAGCGGGGGCATATCTGATTTCGCCTTTTGTTGGCCGCATTCTTGATTGGTACAA AAAAGATACCGGTAAAGACTACGATGCCGTAAATGACCCAGGTGTTGTTTCTGTTACCGAAATCTATAATTATTATAAAC AGCATGGTTTTAATACTGTCGTTATGGGTGCAAGTTTCCGTAATATCGGTGAAATCATCGAGCTAGCAGGCTGCGATCGT CTCACTATTGGCCCTTCTCTGTTAGAAGAACTGGCTAATTCTCAAATAGACATTACTCCTAAACTGGTTGCAGCAACCAG CACTGTTGCTGCCGAAGCCCCATTGACAGAAGCGCAATTCCGTTGGGATTTTAACCAAGATCCAATGGCAGTAGATAAGC TTGCGGAAGGTATTCGAAACTTTGCCATAGACCAAGGCAAACTCGAAGTGATGCTCACGGCTAAGCTCGCAAACTAA
Upstream 100 bases:
>100_bases TAATTTTTTTACATTCAAGGTTGGAAAAGTTGGCAAAATCGCTTCTAATAGTCATCAGTGAATTCCGAGTTAAGACTGCT ACCTGAGAAGGATGTTTTTC
Downstream 100 bases:
>100_bases GCATTCTGGAGACAGTGAGATGACACTCTTGACCCAAAGCTCAACATGGCAAGCTTTATCAGCACACAGTAAAAATGTGC CGCATATGCGGGAATTATTT
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSANLAQQLDDASDKLAVN IGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYQEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFS FAQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVVSVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR LTIGPSLLEELANSQIDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN
Sequences:
>Translated_318_residues MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSANLAQQLDDASDKLAVN IGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYQEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFS FAQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVVSVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR LTIGPSLLEELANSQIDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN >Mature_317_residues ANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAKSQSANLAQQLDDASDKLAVNI GVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYQEAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSF AQARACAEAGAYLISPFVGRILDWYKKDTGKDYDAVNDPGVVSVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDRL TIGPSLLEELANSQIDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRNFAIDQGKLEVMLTAKLAN
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=322, Percent_Identity=58.0745341614907, Blast_Score=371, Evalue=1e-103, Organism=Escherichia coli, GI1786189, Length=313, Percent_Identity=71.5654952076677, Blast_Score=456, Evalue=1e-129, Organism=Escherichia coli, GI1788807, Length=315, Percent_Identity=64.7619047619048, Blast_Score=416, Evalue=1e-118, Organism=Caenorhabditis elegans, GI25153750, Length=319, Percent_Identity=54.2319749216301, Blast_Score=338, Evalue=3e-93, Organism=Caenorhabditis elegans, GI25153752, Length=166, Percent_Identity=52.4096385542169, Blast_Score=172, Evalue=2e-43, Organism=Caenorhabditis elegans, GI17570473, Length=98, Percent_Identity=45.9183673469388, Blast_Score=84, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6321480, Length=308, Percent_Identity=52.9220779220779, Blast_Score=331, Evalue=1e-91, Organism=Saccharomyces cerevisiae, GI6323386, Length=308, Percent_Identity=56.4935064935065, Blast_Score=327, Evalue=2e-90, Organism=Drosophila melanogaster, GI45549185, Length=318, Percent_Identity=58.1761006289308, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 34921; Mature: 34790
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS01054 TRANSALDOLASE_1 ; PS00958 TRANSALDOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAK CCCHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHH SQSANLAQQLDDASDKLAVNIGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYQ CCCHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH EAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSFAQARACAEAGAYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHH RILDWYKKDTGKDYDAVNDPGVVSVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR HHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCC LTIGPSLLEELANSQIDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRN EEECHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHH FAIDQGKLEVMLTAKLAN HCCCCCCEEEEEEEEECC >Mature Secondary Structure ANTLEQLKLYTTIVADTGDIEAIKRYQPEDATTNPSLILKAAQIPEYESLIDNAIDWAK CCHHHHHHHHHHEEECCCCHHHHHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHH SQSANLAQQLDDASDKLAVNIGVEILKLVPGRISTEVDARLSFDKEQSIAKAHKLVRLYQ CCCHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHH EAGVDKSRILIKLASTWEGICAARELEKEGINCNLTLLFSFAQARACAEAGAYLISPFVG HHCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCHHHHHHHHH RILDWYKKDTGKDYDAVNDPGVVSVTEIYNYYKQHGFNTVVMGASFRNIGEIIELAGCDR HHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCC LTIGPSLLEELANSQIDITPKLVAATSTVAAEAPLTEAQFRWDFNQDPMAVDKLAEGIRN EEECHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHH FAIDQGKLEVMLTAKLAN HCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA