Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 126173160

GI number: 126173160

Start: 1048797

End: 1050209

Strand: Direct

Name: ydcR [H]

Synonym: Sbal_0915

Alternate gene names: 126173160

Gene position: 1048797-1050209 (Clockwise)

Preceding gene: 126173157

Following gene: 126173161

Centisome position: 20.45

GC content: 51.24

Gene sequence:

>1413_bases
ATGGCGAAGTACGAGCAGTTAGCGCAGGAATTAAAGACACGAATAGCCCAAGGCGTCTGGCAGGCGGGGGACAAGTTGCC
GTCGCTGCGCCAAACGGTGGCCGATTCGGGTTTGAGTTTGATGACAGTGCTTAATGCCTATCAGCTATTGGAAAGCCAAG
GCGTGATTACGGCGCAGGAAAAATCGGGTTATTTAGTGGCGCCGCTGCCAGAAACCTTTCGCTATCCCGATCGTCCGCGG
CAGATTTATCTCTCTGATAAAGTGGATATTAACGAGTTTGTCTTCTCTGTTTTGCAGGCGTCAAAACAGGCGGGCATAGT
GCCCTTTGGCTCAGGTTTTCCCGATCCCAGTTTATTCCCGCAGCAAGCGTTGGCGCGCTCGTTAGTTAAGGTCACTCGGC
ACATGTCACCGTCTTTTGCCGCCGATAATTTACCGCCGGGGAATGCGGGACTGCGTAAGGCGATTTCCCAACGTTATGCC
AAATTGGGCATGAGCATTTCACCCGATGAAATCATCATTACCTCGGGCGCCATGGAGGCGCTGAACTTGAGTTTAGCGAC
CCTGACTCAAGCGGGAGACTGGGTTGTCATTGAATCACCGACCTTTTATGGCGCGATGCAGGCGATTGAGCGGCTTAAGC
TTAAGGCCATTGCGGTCGCGACGGATCCACAACAGGGCATTGATCTCGAAGCGCTAGCGGAAGTGTTAAAAACCTACCCA
GTGAAAGCCTGCTGGTTGATGAGTCAACATCAAAATCCCCTAGGCTGTAGCTTGTCGGATACTAAAAAACAGGCGCTTTA
TCAGTTACTAAACGAGCATAAAGTCAGTTTAATTGAGGATGATGTTTATCAAGAACTCTATGTCGGCTCTATTGCACCAA
GGCCTGTAAAAGCCTTCGATACCGAAGGAAGGGTGCTGCACTGTGGCTCATTTTCTAAGTCTTTGATTGCAGGTTATCGT
GTCGGCTGGGTGGCGGCGGGACTGCATGCGCCGAAGCTACAGCGCTTGCAAGTTATGTCGACGCTATCGACCAGCGCGCC
CATGCAGCTTGCTATCGCCGATTTTATTCAGTCGGCACAATATGAGCGCCATTTGAAGCAGTTACGTAAAAAGTTAGCCG
ATCGCAAATTGGCCATGTATCAGCTATTGCGCGCGCATCTGCCCGAGTCTGTGGGAGTAAACTTTGCACAGGGCGGCTAT
TTTCTCTGGCTAGCGTTGCCTGCACACATGGATGCCACACAAATTTATTCTGAGGCGATTGAGCGCGGGATCAGTATCGC
TCCCGGAAATCTCTTTAGTAATCAGGTCGAGTTCCGCCATTTTATGCGCTTGAATGCCTCATACGAGTGCTCGCCAGAGA
TAGTCTCTGCTGTCGTAGTGCTGGCCGAACTTATCCGCAACTATTCGCGCTAG

Upstream 100 bases:

>100_bases
TGAGCCTAATATTGGCCCAGCGGTGAAAGCTTGTGTGCCATTAGAGCATGGGATAAGCTGGCTATAACAGACACAGAATA
TATTGATTGAGCTATAACAG

Downstream 100 bases:

>100_bases
CTCATTATGCTAGCTCGTTATGTGAGCCTGTTATGTTAGCTTGTTAGGTTAGTCTGCGAGGTTAGCCCGCTTTGTTGTTT
GAGGTATGGGGACAGAAGTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQEKSGYLVAPLPETFRYPDRPR
QIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSISPDEIIITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
VKACWLMSQHQNPLGCSLSDTKKQALYQLLNEHKVSLIEDDVYQELYVGSIAPRPVKAFDTEGRVLHCGSFSKSLIAGYR
VGWVAAGLHAPKLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGY
FLWLALPAHMDATQIYSEAIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR

Sequences:

>Translated_470_residues
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQEKSGYLVAPLPETFRYPDRPR
QIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSISPDEIIITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
VKACWLMSQHQNPLGCSLSDTKKQALYQLLNEHKVSLIEDDVYQELYVGSIAPRPVKAFDTEGRVLHCGSFSKSLIAGYR
VGWVAAGLHAPKLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGY
FLWLALPAHMDATQIYSEAIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
>Mature_469_residues
AKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQEKSGYLVAPLPETFRYPDRPRQ
IYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFPQQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAK
LGMSISPDEIIITSGAMEALNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYPV
KACWLMSQHQNPLGCSLSDTKKQALYQLLNEHKVSLIEDDVYQELYVGSIAPRPVKAFDTEGRVLHCGSFSKSLIAGYRV
GWVAAGLHAPKLQRLQVMSTLSTSAPMQLAIADFIQSAQYERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYF
LWLALPAHMDATQIYSEAIERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=25.5520504731861, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=25.5520504731861, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI4507369, Length=176, Percent_Identity=23.8636363636364, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=53.6324786324786, Blast_Score=512, Evalue=1e-146,
Organism=Escherichia coli, GI1790797, Length=457, Percent_Identity=35.6673960612691, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1786816, Length=276, Percent_Identity=25.7246376811594, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=326, Percent_Identity=24.5398773006135, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6321929, Length=334, Percent_Identity=24.251497005988, Blast_Score=76, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6322401, Length=247, Percent_Identity=25.1012145748988, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21356535, Length=345, Percent_Identity=24.6376811594203, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51902; Mature: 51771

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQE
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
KSGYLVAPLPETFRYPDRPRQIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFP
CCCEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAKLGMSISPDEIIITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
LNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKACWLMSQHQNPLGCSLSDTKKQALYQLLNEHKVSLIEDDVYQELYVGSIAPRPVKAFD
CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
TEGRVLHCGSFSKSLIAGYRVGWVAAGLHAPKLQRLQVMSTLSTSAPMQLAIADFIQSAQ
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYFLWLALPAHMDATQIYSEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEEEECCCCCHHHHHHHHH
ERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
HCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKYEQLAQELKTRIAQGVWQAGDKLPSLRQTVADSGLSLMTVLNAYQLLESQGVITAQE
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
KSGYLVAPLPETFRYPDRPRQIYLSDKVDINEFVFSVLQASKQAGIVPFGSGFPDPSLFP
CCCEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRHMSPSFAADNLPPGNAGLRKAISQRYAKLGMSISPDEIIITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHH
LNLSLATLTQAGDWVVIESPTFYGAMQAIERLKLKAIAVATDPQQGIDLEALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKACWLMSQHQNPLGCSLSDTKKQALYQLLNEHKVSLIEDDVYQELYVGSIAPRPVKAFD
CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
TEGRVLHCGSFSKSLIAGYRVGWVAAGLHAPKLQRLQVMSTLSTSAPMQLAIADFIQSAQ
CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YERHLKQLRKKLADRKLAMYQLLRAHLPESVGVNFAQGGYFLWLALPAHMDATQIYSEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCEEEEEEECCCCCHHHHHHHHH
ERGISIAPGNLFSNQVEFRHFMRLNASYECSPEIVSAVVVLAELIRNYSR
HCCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]