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The map label for this gene is oprF [H]

Identifier: 126173146

GI number: 126173146

Start: 1031481

End: 1032938

Strand: Direct

Name: oprF [H]

Synonym: Sbal_0901

Alternate gene names: 126173146

Gene position: 1031481-1032938 (Clockwise)

Preceding gene: 126173143

Following gene: 126173149

Centisome position: 20.12

GC content: 48.42

Gene sequence:

>1458_bases
ATGGGACATAAGACGTTATTGAGTGCTGTACTTTTGACCGCGACCTGCGGTGTCGCCACTTTTGCGGTGAATGCTGAATC
GCTGTTTACTCCCTTTCCTGATGCCAAATCGCCTAAAGAAAAGCGAATCCACTTTACGCCCTTTGAACTTATCACCGCAG
TGAATGGTGACAAGTTCACTCTGTTGCCTGTATCAGGAAAATTGACTCGACAAAGCGTTGAGTTACCCGAGGGGTATAGT
CCTGAACATGTGATCAATAACTATTTGGCACAGCTAAAAAAGCTGAATGCTGAAGTGTTATTTAGTTGTCAGGCCGTCAC
CTGCGGTGATGGTCAAGCCATGCAAACTCAGCTAAAGCCGCTTAAAAGCGTGAATGCCGACTATCACAGTGCTTACGTGG
CGGCAAAACTGAAAGGTACTCGCGGTGAGGTTTACACCAGTATCTATGTCGTCAATCGCGAGGATAGATACACCTATTTA
CAAGTCGATACCCTTGAAACGATTCCCGAGCCACTGGATTTGATCCAAGCCAATAGTGACTTTTTACAGCAGGCGCCGAA
AGAGGTTGAGATTAAAGATAGGCGTAGTGACGATGCTCAAGGAGCGGCAGATCATCCTTTGCTGGGGCGTCTGCCTGGCA
GTTACATTGCTCGCTATAAGCAAACCAATTTTACGCAGGTGCCTGTGATTGTGGGCATTGCCGGAGCTGACTACCAGACC
AAGTCGCTGGATGCCAAACTCACCCAGATAATCTACCGCATGCCTGAAAGCTATTCCCTGTTTGAAATCAACAGCAATTA
TGCCGCAGCCGCACAAAAGCTTGCAGCAGAGCGGGTATTCCATTGCAAAGGCACGGCTTGCGGCGACGATGATAGCCTGA
TTAATGCCATCAAATTAATCAAGGACGATAAAGAGGACGAATGGCAGGAGTATCAGCTGTTTAAGCTTAGTCACGCAAAG
GGCGATGTTTACTTCGATATCTATTCCCAAGGATATTTCGATGGCACACCTGCCGATACTACCCTCAGGGTAATGGAACT
CTCTACTCTGAAGGATGATCGAGTGGCGATTGACCTCAATGCTTTGACCGATGCGATTAGCCAAACTGGCAAGGCGACGT
TGGAGGGATTGCTGTTTGATTATGACAGTGAGCGCATGTTGCCTGAGTCCAAACCTGTACTGGAGGTGCTGGCAAGCTAT
CTTAAGCAGCATCCGACACTGAGTTTCTATGTGGTTGAACATACCGATGACAAGGGCGAGCGGAGTTACAATCAAAGCCT
GTCGGAGCGTCGCGCCGCAGCTGTGATTAAGCAGTTGAGTGACGGGTTTCAAATTCCGTCGGCCCAATTAACCGCCCACG
GTAACGGGGAATATAGCCCTGTCGCCAGCAATACTAATGACGCCGGACAAAAACTGAATCGCAGAGTGGAGTTAGTACTT
CGTTCCGATAAAAAGTAG

Upstream 100 bases:

>100_bases
AATACCTAGGTGAAAACTTTTATCGTATTATCTCGTCGCTATTTTTTATCTAGTTAGTTGGTTCGCGAGAGCTAGATTCC
CACACAGAAAAGGATTTTTT

Downstream 100 bases:

>100_bases
CTCATATTAATAAGCTTGAAAGGGGAGCTTAGTTTTATAGAAACGCCTGAGTCATCTCAGGCGTTTCTATCTTCATTGGA
GTTCATTGGAAGATATTGTT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MGHKTLLSAVLLTATCGVATFAVNAESLFTPFPDAKSPKEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPEGYS
PEHVINNYLAQLKKLNAEVLFSCQAVTCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGTRGEVYTSIYVVNREDRYTYL
QVDTLETIPEPLDLIQANSDFLQQAPKEVEIKDRRSDDAQGAADHPLLGRLPGSYIARYKQTNFTQVPVIVGIAGADYQT
KSLDAKLTQIIYRMPESYSLFEINSNYAAAAQKLAAERVFHCKGTACGDDDSLINAIKLIKDDKEDEWQEYQLFKLSHAK
GDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAIDLNALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASY
LKQHPTLSFYVVEHTDDKGERSYNQSLSERRAAAVIKQLSDGFQIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
RSDKK

Sequences:

>Translated_485_residues
MGHKTLLSAVLLTATCGVATFAVNAESLFTPFPDAKSPKEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPEGYS
PEHVINNYLAQLKKLNAEVLFSCQAVTCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGTRGEVYTSIYVVNREDRYTYL
QVDTLETIPEPLDLIQANSDFLQQAPKEVEIKDRRSDDAQGAADHPLLGRLPGSYIARYKQTNFTQVPVIVGIAGADYQT
KSLDAKLTQIIYRMPESYSLFEINSNYAAAAQKLAAERVFHCKGTACGDDDSLINAIKLIKDDKEDEWQEYQLFKLSHAK
GDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAIDLNALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASY
LKQHPTLSFYVVEHTDDKGERSYNQSLSERRAAAVIKQLSDGFQIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
RSDKK
>Mature_484_residues
GHKTLLSAVLLTATCGVATFAVNAESLFTPFPDAKSPKEKRIHFTPFELITAVNGDKFTLLPVSGKLTRQSVELPEGYSP
EHVINNYLAQLKKLNAEVLFSCQAVTCGDGQAMQTQLKPLKSVNADYHSAYVAAKLKGTRGEVYTSIYVVNREDRYTYLQ
VDTLETIPEPLDLIQANSDFLQQAPKEVEIKDRRSDDAQGAADHPLLGRLPGSYIARYKQTNFTQVPVIVGIAGADYQTK
SLDAKLTQIIYRMPESYSLFEINSNYAAAAQKLAAERVFHCKGTACGDDDSLINAIKLIKDDKEDEWQEYQLFKLSHAKG
DVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAIDLNALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYL
KQHPTLSFYVVEHTDDKGERSYNQSLSERRAAAVIKQLSDGFQIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVLR
SDKK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=106, Percent_Identity=36.7924528301887, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 53836; Mature: 53705

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKTLLSAVLLTATCGVATFAVNAESLFTPFPDAKSPKEKRIHFTPFELITAVNGDKFT
CCHHHHHHHHHHHHHCCHHEEEECHHHHCCCCCCCCCCHHCCEEECHHHHHEECCCCEEE
LLPVSGKLTRQSVELPEGYSPEHVINNYLAQLKKLNAEVLFSCQAVTCGDGQAMQTQLKP
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCHHHHHHHHH
LKSVNADYHSAYVAAKLKGTRGEVYTSIYVVNREDRYTYLQVDTLETIPEPLDLIQANSD
HHHCCCCHHHEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECHHHHCCCCHHHHCCCCH
FLQQAPKEVEIKDRRSDDAQGAADHPLLGRLPGSYIARYKQTNFTQVPVIVGIAGADYQT
HHHCCCCCCEECCCCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCEECCEEEEEECCCCCC
KSLDAKLTQIIYRMPESYSLFEINSNYAAAAQKLAAERVFHCKGTACGDDDSLINAIKLI
HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHH
KDDKEDEWQEYQLFKLSHAKGDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAIDLN
HCCCCCHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEHH
ALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYLKQHPTLSFYVVEHTDDKGE
HHHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCH
RSYNQSLSERRAAAVIKQLSDGFQIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEEE
RSDKK
ECCCC
>Mature Secondary Structure 
GHKTLLSAVLLTATCGVATFAVNAESLFTPFPDAKSPKEKRIHFTPFELITAVNGDKFT
CHHHHHHHHHHHHHCCHHEEEECHHHHCCCCCCCCCCHHCCEEECHHHHHEECCCCEEE
LLPVSGKLTRQSVELPEGYSPEHVINNYLAQLKKLNAEVLFSCQAVTCGDGQAMQTQLKP
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEEEEECCCCHHHHHHHHH
LKSVNADYHSAYVAAKLKGTRGEVYTSIYVVNREDRYTYLQVDTLETIPEPLDLIQANSD
HHHCCCCHHHEEEEEEECCCCCEEEEEEEEEECCCCEEEEEECHHHHCCCCHHHHCCCCH
FLQQAPKEVEIKDRRSDDAQGAADHPLLGRLPGSYIARYKQTNFTQVPVIVGIAGADYQT
HHHCCCCCCEECCCCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCEECCEEEEEECCCCCC
KSLDAKLTQIIYRMPESYSLFEINSNYAAAAQKLAAERVFHCKGTACGDDDSLINAIKLI
HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHH
KDDKEDEWQEYQLFKLSHAKGDVYFDIYSQGYFDGTPADTTLRVMELSTLKDDRVAIDLN
HCCCCCHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEHH
ALTDAISQTGKATLEGLLFDYDSERMLPESKPVLEVLASYLKQHPTLSFYVVEHTDDKGE
HHHHHHHHCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCH
RSYNQSLSERRAAAVIKQLSDGFQIPSAQLTAHGNGEYSPVASNTNDAGQKLNRRVELVL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHEEEEE
RSDKK
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]