Click here to switch to the map view.

The map label for this gene is nrfA [H]

Identifier: 126173039

GI number: 126173039

Start: 899399

End: 900802

Strand: Direct

Name: nrfA [H]

Synonym: Sbal_0794

Alternate gene names: 126173039

Gene position: 899399-900802 (Clockwise)

Preceding gene: 126173036

Following gene: 126173040

Centisome position: 17.54

GC content: 47.44

Gene sequence:

>1404_bases
ATGATGAAGAAGATGACAGGTAAGTCCTTTGCACTGAGTGCACTGGTTGCCGCCAGCTTCATGGCGGCGGGCGCAATGGC
GAGTGATAAAACAGAGCCTCGTAACGAAGTTTATAAAGACAAATTTGCTAATCAATACGCCAGTTGGCATGACACAGATA
AAAGCACTGAGAATACCGATGTGTTGGCCTCGGACCCAAGTTTAGTCGTGCTGTGGGCAGGTTATGGTTTTGCTAAAGAT
TACAACGCACCACGTGGTCACATGTATGCCATTACGGATGTGCGTAACACTCTGCGTACTGGCGCACCTACCAACGCGGA
AGATGGTCCAATGCCGATGGCTTGTTGGAGCTGTAAGAGCCCAGATGTGCCGCGTTTGATTGAAGAACAAGGCGAAGATG
GTTACTTCAAAGGCAAATGGGCAAAAGGCGGCCCAGAAGTGGTGAACACCATAGGCTGCGGTGACTGCCATGAAAAAGGC
ACGCCTAAACTACGTATCTCTCGCCCCTTTGCTGAACGTGGTATGGAAGCATTAGGCACACCCTTTGCCAAAGCGTCTAA
AAAAGACAAGCAATCAATGGTCTGTGGTCAGTGCCACGTTGAATACTACTTCGAGAAAAAAGAAGGCAGAAAAGGTTTCG
TTAAATTCCCTTGGGATATGGGCACAACCGTTGAGCAAATGGAAACCTATTACGACGGTATTGAGTTCTCAGATTGGACG
CATGCGCTGTCTAAAACCCCTATGTTAAAAGCGCAGCACCCTGGCTATGAAACTTGGAAACTCGGTGTTCATGGTAAGAA
TGATGTGAGCTGTGTTGATTGTCACATGCCAAAAGTGACCAACGACAAGGGTCGTAAGTATACAGATCATAAAGTGGGTA
ACCCATTTGATCGTTTTGAAGAAACCTGCGCGACGTGCCACAGCCAAAGTAAAGAGTTCTTAGTCGGCTTGACCAACGAA
CGTAAAGCTAAAGTGAAAGAGTTAAAAGGCCGCGCCGAAGCGCAACTGGTGAAAGCGCACTTTGAAGCCGCAGCCGCTTG
GAAAGCCGGTGCAACTGAAGCGGAAATGAAGCCAATTCTAACCGATATCCGTCATTCACAATGGCGTTGGGACTATGCGA
TTGCTTCACACGGCGCTGCTGCGCATGCCCCTGAAGAAGTCTTACGCATCCTAGGCACAGCGGTAGATAAAGCGGCAGAT
GCGCGGGTTAAATTAGCGCAATTGTTAGCGAAAAAAGGCATCACAGATCCTATCGCGATCCCAGATATTTCTACTAAAGC
CAAGGCACAAGCCGCTTTAGGTATGGACATGGAAAAAATGAATGCAGAGAAAGAAGTATTTAAGAAAGACATGTTACCTA
AGTGGGATGAAGAAGCGAAAAAACGCGAAGCCACTTATAAATAA

Upstream 100 bases:

>100_bases
CCAGATACCCCCTAAGAGGTATATTTTTGGCAGGGTTTAGTCACTAACTTTGATCATGGAGATGTCGTATTTTACAACAA
TAATGCAACGCGGAGATGAG

Downstream 100 bases:

>100_bases
TACTTAAGTAGACTTCAAAATAATAAAAAGCTCCTATATAGGGAGCTTTTTTATATCCTTTATTAAAGAATAAATATTAA
ATTTTTATTTCAATTATATA

Product: cytochrome c552

Products: NA

Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MMKKMTGKSFALSALVAASFMAAGAMASDKTEPRNEVYKDKFANQYASWHDTDKSTENTDVLASDPSLVVLWAGYGFAKD
YNAPRGHMYAITDVRNTLRTGAPTNAEDGPMPMACWSCKSPDVPRLIEEQGEDGYFKGKWAKGGPEVVNTIGCGDCHEKG
TPKLRISRPFAERGMEALGTPFAKASKKDKQSMVCGQCHVEYYFEKKEGRKGFVKFPWDMGTTVEQMETYYDGIEFSDWT
HALSKTPMLKAQHPGYETWKLGVHGKNDVSCVDCHMPKVTNDKGRKYTDHKVGNPFDRFEETCATCHSQSKEFLVGLTNE
RKAKVKELKGRAEAQLVKAHFEAAAAWKAGATEAEMKPILTDIRHSQWRWDYAIASHGAAAHAPEEVLRILGTAVDKAAD
ARVKLAQLLAKKGITDPIAIPDISTKAKAQAALGMDMEKMNAEKEVFKKDMLPKWDEEAKKREATYK

Sequences:

>Translated_467_residues
MMKKMTGKSFALSALVAASFMAAGAMASDKTEPRNEVYKDKFANQYASWHDTDKSTENTDVLASDPSLVVLWAGYGFAKD
YNAPRGHMYAITDVRNTLRTGAPTNAEDGPMPMACWSCKSPDVPRLIEEQGEDGYFKGKWAKGGPEVVNTIGCGDCHEKG
TPKLRISRPFAERGMEALGTPFAKASKKDKQSMVCGQCHVEYYFEKKEGRKGFVKFPWDMGTTVEQMETYYDGIEFSDWT
HALSKTPMLKAQHPGYETWKLGVHGKNDVSCVDCHMPKVTNDKGRKYTDHKVGNPFDRFEETCATCHSQSKEFLVGLTNE
RKAKVKELKGRAEAQLVKAHFEAAAAWKAGATEAEMKPILTDIRHSQWRWDYAIASHGAAAHAPEEVLRILGTAVDKAAD
ARVKLAQLLAKKGITDPIAIPDISTKAKAQAALGMDMEKMNAEKEVFKKDMLPKWDEEAKKREATYK
>Mature_467_residues
MMKKMTGKSFALSALVAASFMAAGAMASDKTEPRNEVYKDKFANQYASWHDTDKSTENTDVLASDPSLVVLWAGYGFAKD
YNAPRGHMYAITDVRNTLRTGAPTNAEDGPMPMACWSCKSPDVPRLIEEQGEDGYFKGKWAKGGPEVVNTIGCGDCHEKG
TPKLRISRPFAERGMEALGTPFAKASKKDKQSMVCGQCHVEYYFEKKEGRKGFVKFPWDMGTTVEQMETYYDGIEFSDWT
HALSKTPMLKAQHPGYETWKLGVHGKNDVSCVDCHMPKVTNDKGRKYTDHKVGNPFDRFEETCATCHSQSKEFLVGLTNE
RKAKVKELKGRAEAQLVKAHFEAAAAWKAGATEAEMKPILTDIRHSQWRWDYAIASHGAAAHAPEEVLRILGTAVDKAAD
ARVKLAQLLAKKGITDPIAIPDISTKAKAQAALGMDMEKMNAEKEVFKKDMLPKWDEEAKKREATYK

Specific function: Plays a role in nitrite reduction [H]

COG id: COG3303

COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c-552 family [H]

Homologues:

Organism=Escherichia coli, GI1790506, Length=438, Percent_Identity=64.3835616438356, Blast_Score=612, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003321
- InterPro:   IPR017570
- InterPro:   IPR011031 [H]

Pfam domain/function: PF02335 Cytochrom_C552 [H]

EC number: =1.7.2.2 [H]

Molecular weight: Translated: 51930; Mature: 51930

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKMTGKSFALSALVAASFMAAGAMASDKTEPRNEVYKDKFANQYASWHDTDKSTENTD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VLASDPSLVVLWAGYGFAKDYNAPRGHMYAITDVRNTLRTGAPTNAEDGPMPMACWSCKS
EEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCC
PDVPRLIEEQGEDGYFKGKWAKGGPEVVNTIGCGDCHEKGTPKLRISRPFAERGMEALGT
CCCCHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCHHHHCHHHHCC
PFAKASKKDKQSMVCGQCHVEYYFEKKEGRKGFVKFPWDMGTTVEQMETYYDGIEFSDWT
CHHHHCCHHHHHHHHHHHHEEEEEECCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCHHH
HALSKTPMLKAQHPGYETWKLGVHGKNDVSCVDCHMPKVTNDKGRKYTDHKVGNPFDRFE
HHHHCCCCCEECCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHH
ETCATCHSQSKEFLVGLTNERKAKVKELKGRAEAQLVKAHFEAAAAWKAGATEAEMKPIL
HHHHHHHCCCCCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TDIRHSQWRWDYAIASHGAAAHAPEEVLRILGTAVDKAADARVKLAQLLAKKGITDPIAI
HHHHHCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDISTKAKAQAALGMDMEKMNAEKEVFKKDMLPKWDEEAKKREATYK
CCCCCHHHHHHHHCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MMKKMTGKSFALSALVAASFMAAGAMASDKTEPRNEVYKDKFANQYASWHDTDKSTENTD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VLASDPSLVVLWAGYGFAKDYNAPRGHMYAITDVRNTLRTGAPTNAEDGPMPMACWSCKS
EEECCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCC
PDVPRLIEEQGEDGYFKGKWAKGGPEVVNTIGCGDCHEKGTPKLRISRPFAERGMEALGT
CCCCHHHHHCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCHHHHCHHHHCC
PFAKASKKDKQSMVCGQCHVEYYFEKKEGRKGFVKFPWDMGTTVEQMETYYDGIEFSDWT
CHHHHCCHHHHHHHHHHHHEEEEEECCCCCCCCEECCCCCCCHHHHHHHHHCCCCCCHHH
HALSKTPMLKAQHPGYETWKLGVHGKNDVSCVDCHMPKVTNDKGRKYTDHKVGNPFDRFE
HHHHCCCCCEECCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHH
ETCATCHSQSKEFLVGLTNERKAKVKELKGRAEAQLVKAHFEAAAAWKAGATEAEMKPIL
HHHHHHHCCCCCEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
TDIRHSQWRWDYAIASHGAAAHAPEEVLRILGTAVDKAADARVKLAQLLAKKGITDPIAI
HHHHHCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDISTKAKAQAALGMDMEKMNAEKEVFKKDMLPKWDEEAKKREATYK
CCCCCHHHHHHHHCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA