| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is ycjY [C]
Identifier: 126172884
GI number: 126172884
Start: 721022
End: 722104
Strand: Direct
Name: ycjY [C]
Synonym: Sbal_0635
Alternate gene names: 126172884
Gene position: 721022-722104 (Clockwise)
Preceding gene: 126172883
Following gene: 126172888
Centisome position: 14.06
GC content: 44.04
Gene sequence:
>1083_bases ATGGCGATGATTCAGAATAGAGAACCTACAATGTATATGAAAAATTTAAATAAAATCACTAAAGCAATAATCATGCTAGG CCTGTTATCAACGGCAAGCCTGACTGCATTCGCGCAGGATATGTCTAATGGCGCCGATAATTTCTACCAAAGCGATAGCG TGGCTATGCAACGGGTGACATTTAAAAATCAATATAATATGGAGGTTGTAGGCAATCTGTTTATCCCCAAAAACCTCGAT AAAAAAATGACTCATCCAGTGATAGTCGTCGGTCATCCAATGGGAGCTGTAAAAGAGCAAAGTGCTAATTTATATGCCAC AAAAATGGCGGAACAAGGGTTTATTACCTTATCGCTAGACTTGTCATTTTGGGGCGAAAGTGAAGGCCAACCTCGTAATG CGGTTTCGCCCGATATTTACGCCGAGGATTTTAGTGCAGCGGTCGATTATCTGGGCACAAATAAGCTGATAGATCGTACT CGTATCGGCGTGTTGGGTATTTGTGGTAGTGGCAGTTTTGTGATTAGTGCTGCCAAGATTGATCCGCGGATGAAAGCTAT CGCGACAGTGAGTATGTACAACATGGGCGCAGTAAATCGTCATGCCCTAAACCACTCACAAACCGTTGAACAACGTAAAA AGCTTATCGCAGCAGCTGCGAAACAGCGTGACCTTGAGTTCGGCGGCGGTGAAATTCAATATACCAGCGGGACAGTGCAT CAGTTAGATAAGGATACCCATCCAATCCAGCGCGAGTTTTACGATTTTTATCGCACGCCACGGGGCGAATATACGCCAGC AAGCTCGTCACCACAGTTAACCACTCACCCAACGTTGACCAGCAATATAAAGTTTATGAACTTCTACCCGTTTAACGACA TTGAAACCATCTCACCACGGCCAATGTTGTTTATTACTGGCGATAAGGCGCATTCAAAGGAGTTTAGTGAAGAAGCCTAT CGATTAGCGGGCGAGCCAAAGGAGCTTTACTATGTTAAAGGCGCAGGCCACGTTGATCTGTATGATAGAACCGCACTTAT CCCATGGAATAAGTTGACTGAGTTTTTTAGCAAAACCTTATAA
Upstream 100 bases:
>100_bases GGTTATTCGCGCGGACTCATCCGACTCGGTCAGATAGATGGAAGTGTTGATGCCCTCATGGGCGACAGTGATATCAAAGT ACGAATAGAGCAATCACAAA
Downstream 100 bases:
>100_bases ATTATTATCGGATTAAATGAGTGGTTCACACTGAGCGATAACAGCTGAGTTGCTTGAACCACAGTTTTACTGCGTCGTTA TTGGGTTTATTGCTGATGAG
Product: putative signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MAMIQNREPTMYMKNLNKITKAIIMLGLLSTASLTAFAQDMSNGADNFYQSDSVAMQRVTFKNQYNMEVVGNLFIPKNLD KKMTHPVIVVGHPMGAVKEQSANLYATKMAEQGFITLSLDLSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTNKLIDRT RIGVLGICGSGSFVISAAKIDPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIQYTSGTVH QLDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPRPMLFITGDKAHSKEFSEEAY RLAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL
Sequences:
>Translated_360_residues MAMIQNREPTMYMKNLNKITKAIIMLGLLSTASLTAFAQDMSNGADNFYQSDSVAMQRVTFKNQYNMEVVGNLFIPKNLD KKMTHPVIVVGHPMGAVKEQSANLYATKMAEQGFITLSLDLSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTNKLIDRT RIGVLGICGSGSFVISAAKIDPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIQYTSGTVH QLDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPRPMLFITGDKAHSKEFSEEAY RLAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL >Mature_359_residues AMIQNREPTMYMKNLNKITKAIIMLGLLSTASLTAFAQDMSNGADNFYQSDSVAMQRVTFKNQYNMEVVGNLFIPKNLDK KMTHPVIVVGHPMGAVKEQSANLYATKMAEQGFITLSLDLSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTNKLIDRTR IGVLGICGSGSFVISAAKIDPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIQYTSGTVHQ LDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPRPMLFITGDKAHSKEFSEEAYR LAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ycjY [H]
Homologues:
Organism=Escherichia coli, GI221142683, Length=310, Percent_Identity=33.2258064516129, Blast_Score=171, Evalue=9e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15 [H]
EC number: NA
Molecular weight: Translated: 40294; Mature: 40163
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMIQNREPTMYMKNLNKITKAIIMLGLLSTASLTAFAQDMSNGADNFYQSDSVAMQRVT CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH FKNQYNMEVVGNLFIPKNLDKKMTHPVIVVGHPMGAVKEQSANLYATKMAEQGFITLSLD HCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCEEEEECCCCCEEEEEEE LSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTNKLIDRTRIGVLGICGSGSFVISAAKI EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCEEEEEECC DPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIQYTSGTVH CCHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHH QLDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPR HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCC PMLFITGDKAHSKEFSEEAYRLAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL EEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEECCHHHHHHHHHHCC >Mature Secondary Structure AMIQNREPTMYMKNLNKITKAIIMLGLLSTASLTAFAQDMSNGADNFYQSDSVAMQRVT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH FKNQYNMEVVGNLFIPKNLDKKMTHPVIVVGHPMGAVKEQSANLYATKMAEQGFITLSLD HCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHCCCCEEEEECCCCCEEEEEEE LSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTNKLIDRTRIGVLGICGSGSFVISAAKI EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCEEEEEECC DPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIQYTSGTVH CCHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHH QLDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPR HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCC PMLFITGDKAHSKEFSEEAYRLAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL EEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCEEECCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1427017; 10984043 [H]