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The map label for this gene is gntR [C]

Identifier: 125625226

GI number: 125625226

Start: 2428725

End: 2429573

Strand: Direct

Name: gntR [C]

Synonym: llmg_2470

Alternate gene names: 125625226

Gene position: 2428725-2429573 (Clockwise)

Preceding gene: 125625222

Following gene: 125625227

Centisome position: 96.02

GC content: 37.1

Gene sequence:

>849_bases
ATGTCGCGTACTTTAATCAGCCGAATCCGAAGTTATTATGATAACCTCAGTAAATCAGACCAGGCAATTTCTGACTATTT
AATTGCAAATATTGATAACGCTGCGATGCTGTCAATTCAAGAATTTGCTCAGAAAACCCAAGTCTCAACCGCTACAATTT
CCAGATTTTCCAAAAAAATCGGCTTTAATTCTTTCCAAGAATTGAAGCTGGCCATTCACGCCACTGATTCAACGCGAGAT
GATGAATTTTTTAGCGAACTTTCACCTACTGATGATTATAAAGAAATACTGACAAAAAACTTCAACGGCAATATTTCATC
ACTAAATTCAACTTTAAATCTTATTAGTAACAGACAACTTGACCAAACAATGGAAATATTACTCAAAGCTAATACTTGTG
GTTTTTTTGGTTTAGGTGGTTCAAACGCTGTCGCTTTGATTGCTTTTCATAAATTTTTGAGAATGCCTCTACACTGTGTC
TATCATCAGGATTTCCATTTTCAACAAATGCAAGCCGCAAAATTGACAAGCGAAGATTGTGCTTTTGTGATTTCACATAC
AGGGAAAAACAAAGATACGATGCATTTGGTCGAAATTTTGAAAAGTCGGGGTGTGCCAATTATTGCACTAACCTCCTTTG
CCAGCTCTCCTTTAGCAAAGGCTGCTGATGTGGCGCTCATTTCTATTTCTGAAGAAATTTCTTTCCGACCCGAGGCAGTG
GCTTCGACCGTTTCTCAAATTAGTTTACTCGATGCTCTTTTCATGATGTATGGAATGAAAATGAAAGATGTTTCCGAGGG
AACTTTATCTGAAATCCGAAAAGTAATTAGCGATTCACGTATTTCTTAG

Upstream 100 bases:

>100_bases
TTCGCATTGTTCGGTCATAATAAGATGATAGCCAGTACACGAAATATTGTTTCGTGTTACTGGCTATGGTATAATGTAGT
CAATTAGAAGGAGGCTTGAT

Downstream 100 bases:

>100_bases
AATTTATCCATTTCATTTTAGAGAAAGGATGTGATTTTATGGCATTTTCTAACACTAGACGACGCTACGCAAGTTTTGAT
ACCGTCGCGTCTATTCCTGG

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDNAAMLSIQEFAQKTQVSTATISRFSKKIGFNSFQELKLAIHATDSTRD
DEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCV
YHQDFHFQQMQAAKLTSEDCAFVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAV
ASTVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS

Sequences:

>Translated_282_residues
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDNAAMLSIQEFAQKTQVSTATISRFSKKIGFNSFQELKLAIHATDSTRD
DEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCV
YHQDFHFQQMQAAKLTSEDCAFVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAV
ASTVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS
>Mature_281_residues
SRTLISRIRSYYDNLSKSDQAISDYLIANIDNAAMLSIQEFAQKTQVSTATISRFSKKIGFNSFQELKLAIHATDSTRDD
EFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQLDQTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVY
HQDFHFQQMQAAKLTSEDCAFVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAVA
STVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=251, Percent_Identity=27.0916334661355, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788159, Length=278, Percent_Identity=26.2589928057554, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1788767, Length=257, Percent_Identity=26.0700389105058, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082130, Length=254, Percent_Identity=25.9842519685039, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31337; Mature: 31206

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTLISRIRSYYDNLSKSDQAISDYLIANIDNAAMLSIQEFAQKTQVSTATISRFSKKI
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFNSFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQL
CCCHHHHEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
DQTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDC
HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
AFVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAV
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHEEEEEEHHHHCCCHHHH
ASTVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRTLISRIRSYYDNLSKSDQAISDYLIANIDNAAMLSIQEFAQKTQVSTATISRFSKKI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFNSFQELKLAIHATDSTRDDEFFSELSPTDDYKEILTKNFNGNISSLNSTLNLISNRQL
CCCHHHHEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
DQTMEILLKANTCGFFGLGGSNAVALIAFHKFLRMPLHCVYHQDFHFQQMQAAKLTSEDC
HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
AFVISHTGKNKDTMHLVEILKSRGVPIIALTSFASSPLAKAADVALISISEEISFRPEAV
EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHEEEEEEHHHHCCCHHHH
ASTVSQISLLDALFMMYGMKMKDVSEGTLSEIRKVISDSRIS
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]