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The map label for this gene is radA [H]

Identifier: 125625104

GI number: 125625104

Start: 2299853

End: 2301214

Strand: Reverse

Name: radA [H]

Synonym: llmg_2343

Alternate gene names: 125625104

Gene position: 2301214-2299853 (Counterclockwise)

Preceding gene: 125625105

Following gene: 125625102

Centisome position: 90.98

GC content: 39.13

Gene sequence:

>1362_bases
ATGGCGAAGAAAAAATCATCTTTTGTTTGTCAAAATTGTGGTTATAAGTCTGCAAAGTATCTTGGGCGATGCCCAAATTG
TGGAGAGTGGTCCTCTTTTGTTGAAGAAGTTGAAGTACAGGAAGTCAAAAATCAGCGAGTGTCGATGTCTGGTGAACGTT
CAAAACCAATGAAATTAGATGAAGTTGAGCTTTTTGATACACCACGTATTGAAACAGATCTTGACGAATTTAATCGTGTT
TTAGGTGGTGGTGTTGTTCCTGGTTCACTCGTTTTGATTGGTGGAGACCCAGGAATAGGAAAATCTACGTTGCTTTTGCA
AGTATCGACTCAGCTTGCATCAAGAGGACGGGTTCTCTATGTGAGTGGTGAAGAATCTGCTCAACAAATTAAGCTTAGAG
CGGAACGTTTGGGCGATATTGATCGAGATTTTTATCTTTACGCCGAGACTAACATGCAGTCAATTCGTGCTGAAGTTGAA
CGTTTGAAGCCAAATTTTTTGATTATTGATTCGATCCAAACGATTATGACACCTGAAATTCAATCAACTCAAGGCTCTGT
GAGTCAAGTTCGAGAAGTGACAGGTGAACTCATGCAAATTGCCAAAACGAATGATATTGCTACTTTTATCGTTGGTCATG
TGACGAAAGAAGGTCAATTGGCAGGACCAAGAATGCTAGAGCACATGGTTGATACCGTTCTTTATTTTGAAGGAGAAAGA
AATAATACTTTTAGAATTCTTCGAGCAGTTAAAAACCGGTTTGGGTCAACTAATGAAATTGGTATATTTGAAATGCAAGG
GCATGGTTTAGTTGAAGTAACTAATCCTTCTGAGGTTTTCTTGGAAGAGCGATTAGAGGGTTCAACTGGTTCTGCTATTG
TTTGTGCACTCGAAGGGACACGTCCGATACTAGTTGAAATACAGGCTTTAACTACACCAACAATGTTTGGAAATGCTAAG
AGAACAACTTCTGGTTTAGATTTTAATAGAGTGAGCCTGATTATGGCAGTACTTGAAAAACGGACAGGCTTATTGATGCA
AAATCAAGATGCTTACCTTAAATCAGCTGGGGGAGTAAAATTAGATGAGCCAGCCATTGACCTTGCGGTTGCTGTCGCTG
TAGCCTCAAGTTATAAAGAACTTCCGACGGATGCGCGTGAATGTTTTATTGGTGAAATTGGCTTAACAGGAGAGATTCGA
CGTGTGACGCGAATTGAACAAAGACTGAATGAAGCTGCTAAATTAGGATTCAAAAAAGTCTATGCTCCTAAAAATTCAAT
TGTGGGAATTGATATTCCTGAACAAATAAAAGTAATTGGGGTAACAACCCTAACTGAATGTCTAAAATTAGTATTTGGCT
AA

Upstream 100 bases:

>100_bases
ATAATAAGATAAAAAATTATTTATCAGGGTATTTTAGGACGATTTATTCGCTTTTTTGTTACATCTGAATAAATTTTACG
TATAAATAAGTGGAGGGAAA

Downstream 100 bases:

>100_bases
AATAAGTAATAAAAGCTATTTGGATAGACAAATAGCTTTTATTTTTTATGAAAATTTCAGATTGTAAGAATATAGTATAT
AGGCAAATAATATTAGAATA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Sequences:

>Translated_453_residues
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG
>Mature_452_residues
AKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFDTPRIETDLDEFNRVL
GGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVER
LKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGERN
NTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAKR
TTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRR
VTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=457, Percent_Identity=43.1072210065646, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49898; Mature: 49767

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLD
CCCCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
EVELFDTPRIETDLDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLY
CEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEEHHHHHCCCEEE
VSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFLIIDSIQTIMTPEI
EECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECHHHHCCCCC
QSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEHEECCCCCCCCCCHHHHHHHHHHHEEEECCC
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGT
CCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCEEEEEECCC
RPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVK
CEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCCE
LDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTRIEQRLNEAAKLGFKKV
ECCCHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHE
YAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG
ECCCCCEEECCCCCCEEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
AKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLD
CCCCCCHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
EVELFDTPRIETDLDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLY
CEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEEEHHHHHCCCEEE
VSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVERLKPNFLIIDSIQTIMTPEI
EECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECHHHHCCCCC
QSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
CCCCCHHHHHHHHHHHHHHHHCCCCCEEEHEECCCCCCCCCCHHHHHHHHHHHEEEECCC
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGT
CCHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCHHHHHHHHCCCCCCCEEEEEECCC
RPILVEIQALTTPTMFGNAKRTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVK
CEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCCE
LDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIRRVTRIEQRLNEAAKLGFKKV
ECCCHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHE
YAPKNSIVGIDIPEQIKVIGVTTLTECLKLVFG
ECCCCCEEECCCCCCEEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]