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The map label for this gene is rpiR [C]

Identifier: 125625005

GI number: 125625005

Start: 2201271

End: 2202023

Strand: Reverse

Name: rpiR [C]

Synonym: llmg_2238

Alternate gene names: 125625005

Gene position: 2202023-2201271 (Counterclockwise)

Preceding gene: 125625006

Following gene: 125625004

Centisome position: 87.05

GC content: 31.61

Gene sequence:

>753_bases
ATGTCCAATTTAACCAATGCAGAATCCTATACTTGGCAAATTATTCAGGAAAATTATGAAAAAATCCCTCAATTATCGAT
ATCAGAGTTGGCGGAACTGGCTCATGTTTCTTTATCAACTGTAAATCGAACCGTCAGAAAAAAAGGCTTTGAAGGTTATG
GGGAGTTTAGATATTCAATTCGTGAGAAAAAACTCCCTGAAATTAATGGATTTTCAAAAGAAGTTTTAGGAGCTATCGCT
AAAAATCAAGAAGAACTTTTAAAAACCATTGAAAATATCTCGGCTGAAGAAATTGAAAAAGCTGTTGAATTAATTCAAGA
ATCAGAAGAAATATTAATATTTTCTCGAGGTTTGTCTACGAATGTTGCTGACGAACTAATGAAAAAATTACAACTTTTTC
GTAAAAGAGTCAGCTTACACGATGATTCAAAATACATGGCTTACTATGCTCAATTTGTTAATGAAAAAAGTTTGATTATT
GTTTTATCTCTTTCGGGAGAAACGGTGGAAATTTTAAATGCTTTAAGAATTGCCAAAGCTCAGAATCCCAAAATCTTATC
CTTGACTGTCAATGCCAATACTAATCTGACCAATCTTTCTGATATTAGTTTGATAGGTTATAAAAGCAGTCTTGAAGTCA
ATTATTTTGATTTAGATGTTCACAGTCGACTCTCATTATCAATTTTATCGCGGGTATTAATTGATGCCTATTCTATTTAT
ACTTTAAAACAAGGTCGCTCTGATATTAGATAA

Upstream 100 bases:

>100_bases
ATTTCATAGCTATTATAGCAAATGTAAGCGCCAAATGTTATAATTTTATAATAGATAACATTTTTTGATAACAAAAAAGA
AATCAATGGAGTAAAAAAAC

Downstream 100 bases:

>100_bases
TGTCAGAGTTTTTCTTTCACTAAATAAAAATAGAAAGGGTTTCCAAAAGATAAGCCGGAATTGGAAACCCTTTCTTAAAC
CAAAGTGTTATACTCTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSNLTNAESYTWQIIQENYEKIPQLSISELAELAHVSLSTVNRTVRKKGFEGYGEFRYSIREKKLPEINGFSKEVLGAIA
KNQEELLKTIENISAEEIEKAVELIQESEEILIFSRGLSTNVADELMKKLQLFRKRVSLHDDSKYMAYYAQFVNEKSLII
VLSLSGETVEILNALRIAKAQNPKILSLTVNANTNLTNLSDISLIGYKSSLEVNYFDLDVHSRLSLSILSRVLIDAYSIY
TLKQGRSDIR

Sequences:

>Translated_250_residues
MSNLTNAESYTWQIIQENYEKIPQLSISELAELAHVSLSTVNRTVRKKGFEGYGEFRYSIREKKLPEINGFSKEVLGAIA
KNQEELLKTIENISAEEIEKAVELIQESEEILIFSRGLSTNVADELMKKLQLFRKRVSLHDDSKYMAYYAQFVNEKSLII
VLSLSGETVEILNALRIAKAQNPKILSLTVNANTNLTNLSDISLIGYKSSLEVNYFDLDVHSRLSLSILSRVLIDAYSIY
TLKQGRSDIR
>Mature_249_residues
SNLTNAESYTWQIIQENYEKIPQLSISELAELAHVSLSTVNRTVRKKGFEGYGEFRYSIREKKLPEINGFSKEVLGAIAK
NQEELLKTIENISAEEIEKAVELIQESEEILIFSRGLSTNVADELMKKLQLFRKRVSLHDDSKYMAYYAQFVNEKSLIIV
LSLSGETVEILNALRIAKAQNPKILSLTVNANTNLTNLSDISLIGYKSSLEVNYFDLDVHSRLSLSILSRVLIDAYSIYT
LKQGRSDIR

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 28403; Mature: 28272

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLTNAESYTWQIIQENYEKIPQLSISELAELAHVSLSTVNRTVRKKGFEGYGEFRYSI
CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
REKKLPEINGFSKEVLGAIAKNQEELLKTIENISAEEIEKAVELIQESEEILIFSRGLST
HHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCC
NVADELMKKLQLFRKRVSLHDDSKYMAYYAQFVNEKSLIIVLSLSGETVEILNALRIAKA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC
QNPKILSLTVNANTNLTNLSDISLIGYKSSLEVNYFDLDVHSRLSLSILSRVLIDAYSIY
CCCEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
TLKQGRSDIR
HHHCCCCCCC
>Mature Secondary Structure 
SNLTNAESYTWQIIQENYEKIPQLSISELAELAHVSLSTVNRTVRKKGFEGYGEFRYSI
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
REKKLPEINGFSKEVLGAIAKNQEELLKTIENISAEEIEKAVELIQESEEILIFSRGLST
HHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCC
NVADELMKKLQLFRKRVSLHDDSKYMAYYAQFVNEKSLIIVLSLSGETVEILNALRIAKA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCC
QNPKILSLTVNANTNLTNLSDISLIGYKSSLEVNYFDLDVHSRLSLSILSRVLIDAYSIY
CCCEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
TLKQGRSDIR
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]