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The map label for this gene is ymfH [H]

Identifier: 125624993

GI number: 125624993

Start: 2188155

End: 2189438

Strand: Reverse

Name: ymfH [H]

Synonym: llmg_2226

Alternate gene names: 125624993

Gene position: 2189438-2188155 (Counterclockwise)

Preceding gene: 125624994

Following gene: 125624992

Centisome position: 86.56

GC content: 33.1

Gene sequence:

>1284_bases
TTGAAAAGTAAGTTTTATGAAAAAACAGGGGAAAGATTATATATAGATACTTTACTCAATGGTTTGACTGTTTATTATCT
GCCAAAGGCAGACTATAACCGAACTTATGGCTTATTTACCACAAATTTTGGTTCCCTCGATACAAGTTTTGTCCCCTTAG
GTGAGCAAGATTTCCAAACTTTCCCAGAAGGTATTGCGCATTTTTTAGAGCACAAACTTTTTGAAAAAGAAGAGGGCGAC
GTTATGTATAAATTTGGAGCATTAGGGGCTCAAACTAATGCTTTCACAAGTTTTTCGCGTACTTCATATCTCTTTTCTAC
TCTAGAAAATTCTTACGAATGTACCGAACTTTTACTTGATTTTGTTCAAAAACCTTATTTTACTAAGGAAAATGTTGAAA
AAGAACAAGGAATTATCCAACAAGAAATTCAAATGTATCAAGATGACAGTGATTGGCGTCTTTTTGCAGGACTTTTGGAA
AAAATGTATCCTGATTCACCACTAGCAGCTGATATTGCTGGAACGCCAGCAACGATTAATGCGATTACGGCTGATGACTT
GTATAAAAATTATGAAGTTTTTTATCATCCTAAAAACATGAATTTGTTTTTGACTGGTCCCTTTGATATTGAAATGATGG
CTGATTTTGTACGCAATAATCAAGCGAAAAAAGATTTTGCTAATTTAAGGGAAATTAAAAGAAAAGAAATTATTGCGAGT
GAGCCAATTACTGGGGGAACTTTAGAACTTGAAGTTGCAATGCCAAAATTCTCTTTGGGTTTAAGAGGTGAAGACGCGCT
TGCACAAGATTCAAAGACATTATTTAAGTACAAACTCGCCAATCAACTTTTTCTAGATTTGCTTTTTGGCAGGACCAGTC
AGCGCTATGAGGAACTTTATAATGCTGGTTTAATCGATGATTCCTTTGGTTTTTCCTTTGATTTGGATAAGAGATTTCAC
TTTGCGGTGCTGACAGCTGACACAGAAAATCCTAAAAAATTAGGTCAAACTTTGCAAGAAGCCATAAAAAGTTATAAAAT
AGATAGAGATTTTAGTGAAGAGCATCTCGATTTACTTAAAAGAGAAATGCTGGGTGATTATTTTAGCTCATTAAATTCGC
TTGAATATATTGCCAATCAATTTTCATCTGAAATTTATGATGATATAAATTTCTTTGATTTTCCTGAAATCTTGAAAGAA
TTAAGCCTATCAGAAATTGAAAAATTTGCTGACCAATTTATTTCTGAAATGAAGAAAGTAGAATTTACCATTCTACCTAA
ATAA

Upstream 100 bases:

>100_bases
TCAAAAGCAGATTTGATAAGAGTTGCCAAATTACTAAGTCTACAGGCAGAATATTTTATGAAAGGATTTACTGTGAATCA
GGAAAATATGGAGGTCAGCC

Downstream 100 bases:

>100_bases
AGTTATTCTGTCAGTAAGACAGAAACTGAAAAATTTACTGACAGAAATTTTAGTTGATTCGGATAAAACGAGTCAGTAAA
TTAAAAGCCGCTCCAAGTTT

Product: M16 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MKSKFYEKTGERLYIDTLLNGLTVYYLPKADYNRTYGLFTTNFGSLDTSFVPLGEQDFQTFPEGIAHFLEHKLFEKEEGD
VMYKFGALGAQTNAFTSFSRTSYLFSTLENSYECTELLLDFVQKPYFTKENVEKEQGIIQQEIQMYQDDSDWRLFAGLLE
KMYPDSPLAADIAGTPATINAITADDLYKNYEVFYHPKNMNLFLTGPFDIEMMADFVRNNQAKKDFANLREIKRKEIIAS
EPITGGTLELEVAMPKFSLGLRGEDALAQDSKTLFKYKLANQLFLDLLFGRTSQRYEELYNAGLIDDSFGFSFDLDKRFH
FAVLTADTENPKKLGQTLQEAIKSYKIDRDFSEEHLDLLKREMLGDYFSSLNSLEYIANQFSSEIYDDINFFDFPEILKE
LSLSEIEKFADQFISEMKKVEFTILPK

Sequences:

>Translated_427_residues
MKSKFYEKTGERLYIDTLLNGLTVYYLPKADYNRTYGLFTTNFGSLDTSFVPLGEQDFQTFPEGIAHFLEHKLFEKEEGD
VMYKFGALGAQTNAFTSFSRTSYLFSTLENSYECTELLLDFVQKPYFTKENVEKEQGIIQQEIQMYQDDSDWRLFAGLLE
KMYPDSPLAADIAGTPATINAITADDLYKNYEVFYHPKNMNLFLTGPFDIEMMADFVRNNQAKKDFANLREIKRKEIIAS
EPITGGTLELEVAMPKFSLGLRGEDALAQDSKTLFKYKLANQLFLDLLFGRTSQRYEELYNAGLIDDSFGFSFDLDKRFH
FAVLTADTENPKKLGQTLQEAIKSYKIDRDFSEEHLDLLKREMLGDYFSSLNSLEYIANQFSSEIYDDINFFDFPEILKE
LSLSEIEKFADQFISEMKKVEFTILPK
>Mature_427_residues
MKSKFYEKTGERLYIDTLLNGLTVYYLPKADYNRTYGLFTTNFGSLDTSFVPLGEQDFQTFPEGIAHFLEHKLFEKEEGD
VMYKFGALGAQTNAFTSFSRTSYLFSTLENSYECTELLLDFVQKPYFTKENVEKEQGIIQQEIQMYQDDSDWRLFAGLLE
KMYPDSPLAADIAGTPATINAITADDLYKNYEVFYHPKNMNLFLTGPFDIEMMADFVRNNQAKKDFANLREIKRKEIIAS
EPITGGTLELEVAMPKFSLGLRGEDALAQDSKTLFKYKLANQLFLDLLFGRTSQRYEELYNAGLIDDSFGFSFDLDKRFH
FAVLTADTENPKKLGQTLQEAIKSYKIDRDFSEEHLDLLKREMLGDYFSSLNSLEYIANQFSSEIYDDINFFDFPEILKE
LSLSEIEKFADQFISEMKKVEFTILPK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49405; Mature: 49405

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKFYEKTGERLYIDTLLNGLTVYYLPKADYNRTYGLFTTNFGSLDTSFVPLGEQDFQT
CCCCHHHHCCCEEEHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
FPEGIAHFLEHKLFEKEEGDVMYKFGALGAQTNAFTSFSRTSYLFSTLENSYECTELLLD
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
FVQKPYFTKENVEKEQGIIQQEIQMYQDDSDWRLFAGLLEKMYPDSPLAADIAGTPATIN
HHHCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
AITADDLYKNYEVFYHPKNMNLFLTGPFDIEMMADFVRNNQAKKDFANLREIKRKEIIAS
EEEHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
EPITGGTLELEVAMPKFSLGLRGEDALAQDSKTLFKYKLANQLFLDLLFGRTSQRYEELY
CCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NAGLIDDSFGFSFDLDKRFHFAVLTADTENPKKLGQTLQEAIKSYKIDRDFSEEHLDLLK
HCCCCCCCCCCEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
REMLGDYFSSLNSLEYIANQFSSEIYDDINFFDFPEILKELSLSEIEKFADQFISEMKKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHC
EFTILPK
CEEECCC
>Mature Secondary Structure
MKSKFYEKTGERLYIDTLLNGLTVYYLPKADYNRTYGLFTTNFGSLDTSFVPLGEQDFQT
CCCCHHHHCCCEEEHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
FPEGIAHFLEHKLFEKEEGDVMYKFGALGAQTNAFTSFSRTSYLFSTLENSYECTELLLD
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
FVQKPYFTKENVEKEQGIIQQEIQMYQDDSDWRLFAGLLEKMYPDSPLAADIAGTPATIN
HHHCCCCCHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
AITADDLYKNYEVFYHPKNMNLFLTGPFDIEMMADFVRNNQAKKDFANLREIKRKEIIAS
EEEHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
EPITGGTLELEVAMPKFSLGLRGEDALAQDSKTLFKYKLANQLFLDLLFGRTSQRYEELY
CCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NAGLIDDSFGFSFDLDKRFHFAVLTADTENPKKLGQTLQEAIKSYKIDRDFSEEHLDLLK
HCCCCCCCCCCEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
REMLGDYFSSLNSLEYIANQFSSEIYDDINFFDFPEILKELSLSEIEKFADQFISEMKKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHC
EFTILPK
CEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]