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The map label for this gene is ps401 [H]

Identifier: 125624913

GI number: 125624913

Start: 2106266

End: 2107480

Strand: Direct

Name: ps401 [H]

Synonym: llmg_2142

Alternate gene names: 125624913

Gene position: 2106266-2107480 (Clockwise)

Preceding gene: 125624912

Following gene: 125624933

Centisome position: 83.27

GC content: 33.66

Gene sequence:

>1215_bases
ATGTCTTGCCCGACAATAGAACAGGAGAAAAAAATGAATATTAAAGAAGTCAAAAAAAAAGACGGTACAACCGTCTATAA
AGTAAATGTCTATCTTGGTGTAGATAGCCTAACAGGTAAGCAAGTACGCACCACGGTTACAGCCAAGAACCGTAAAACGT
GCGAGAATAAAGCTCACCAAGCTATGAATAAGTTTATCAAAAATGGCTCTACTGTTGCAAGAGAAAAAGTTTCATTTGAC
AATTTTAATGCCTTAGCCACTAGTTGGTTTGATTCTTATAAATTGACAGTAAAAGCAAACACTATCAGAATCAATAGTAA
TTTTTTAAAAAATTATATTTTGCCAGCACTCGGAAACTATAAAGTTGAGAAAATTACAACTGTACTATTGCAAAATATTG
TTAATGACTGGGCTAGAAATGCCAATACTGCTGAAATAGTTAACGGTAATCGTGAAAAGGGAAAAAGTAAAGATTATAAA
TTGTTGCTCAATATCATCAAACGCATTCTTGATTATGGTATGCAATTAGGTGTTATCTCAGACAATCCAGCTATAAAAGT
ATTTTCTCCAAAACTCAAGACAAGAACAGTCAAAAAAATAAAGTATTTTAACAATGATGAACTCAAACGCTTCTTGGATT
ACCTTGACTCGTTACAATCAACCACAGCAAATATAAAAAGCACTACTCTATACAAGCTTTTGCTTGCTACTGGTTTGCGT
ATCTGTGAGGCTTTAGCCTTATCATGGTCTGATATTGATTTTGTCAATAATACCGTTAGTGTATCTAAGACACTCATACA
ATACAGCAATGAGATACAAGACAGTGCAAAAACAAAAGAAAGCAATCGTTTAGTTTCTGTAGATAGCGAGACAATTTCAA
TGTTGAAAGAGTGGAGAAAACACCAAAATTACGGTGCTATATCTTTGCATGATTCTCTAGTTTTCTCATATCATCAAAAA
ATGAGAACTTACGAACTCGAAAGACAGCACTTAGTTCGACACTTTAAAAAAGCAAAAGTTCCTAACATAGGTTTTCATGG
TTTCCGTCACACTCACGCAAGCCTACTAATGAACAATGATGTAAATCCTAAAGAAATTCAAATGAGATTAGGACATGCAG
ACTATTCGATCACAATGAATTTGTACAGTCATCTTGCTAAAGAGAAAAAGAAAGAAACTGCTGAAAAGTTCGCTAATATA
CTTAAAGCACTATGA

Upstream 100 bases:

>100_bases
TTCATGAACGAGTACGAGTTTTTAGAAAATTTCACTGATGGTATTGATGATATGGAATTTGAATAAATAAAACTTTGATA
CTATTGCTTTCTCCTTAATC

Downstream 100 bases:

>100_bases
TTTTTCGAGTTTTTTCCCGAACGTAACTAAAAACGTAACTAACTAATATAATGACAACTGAAATCCCTTTATATAAGGGA
TTCTAGGGATTTGTTGTGAT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSCPTIEQEKKMNIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTVAREKVSFD
NFNALATSWFDSYKLTVKANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYK
LLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLR
ICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQK
MRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHLAKEKKKETAEKFANI
LKAL

Sequences:

>Translated_404_residues
MSCPTIEQEKKMNIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTVAREKVSFD
NFNALATSWFDSYKLTVKANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYK
LLLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLR
ICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQK
MRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHLAKEKKKETAEKFANI
LKAL
>Mature_403_residues
SCPTIEQEKKMNIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQAMNKFIKNGSTVAREKVSFDN
FNALATSWFDSYKLTVKANTIRINSNFLKNYILPALGNYKVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKL
LLNIIKRILDYGMQLGVISDNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLRI
CEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRKHQNYGAISLHDSLVFSYHQKM
RTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNNDVNPKEIQMRLGHADYSITMNLYSHLAKEKKKETAEKFANIL
KAL

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=244, Percent_Identity=25.8196721311475, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46317; Mature: 46186

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCPTIEQEKKMNIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQ
CCCCCCCHHHCCCHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHH
AMNKFIKNGSTVAREKVSFDNFNALATSWFDSYKLTVKANTIRINSNFLKNYILPALGNY
HHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCEEEEEEEEEEEECHHHHHHHHHHCCCCC
KVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVIS
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
DNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLR
CCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRK
HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
HQNYGAISLHDSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNND
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
VNPKEIQMRLGHADYSITMNLYSHLAKEKKKETAEKFANILKAL
CCHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SCPTIEQEKKMNIKEVKKKDGTTVYKVNVYLGVDSLTGKQVRTTVTAKNRKTCENKAHQ
CCCCCCHHHCCCHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHH
AMNKFIKNGSTVAREKVSFDNFNALATSWFDSYKLTVKANTIRINSNFLKNYILPALGNY
HHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCEEEEEEEEEEEECHHHHHHHHHHCCCCC
KVEKITTVLLQNIVNDWARNANTAEIVNGNREKGKSKDYKLLLNIIKRILDYGMQLGVIS
HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
DNPAIKVFSPKLKTRTVKKIKYFNNDELKRFLDYLDSLQSTTANIKSTTLYKLLLATGLR
CCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ICEALALSWSDIDFVNNTVSVSKTLIQYSNEIQDSAKTKESNRLVSVDSETISMLKEWRK
HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
HQNYGAISLHDSLVFSYHQKMRTYELERQHLVRHFKKAKVPNIGFHGFRHTHASLLMNND
HCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
VNPKEIQMRLGHADYSITMNLYSHLAKEKKKETAEKFANILKAL
CCHHHHHEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]