Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 125624748

GI number: 125624748

Start: 1951928

End: 1952386

Strand: Reverse

Name: nifU [H]

Synonym: llmg_1970

Alternate gene names: 125624748

Gene position: 1952386-1951928 (Counterclockwise)

Preceding gene: 125624749

Following gene: 125624747

Centisome position: 77.19

GC content: 39.65

Gene sequence:

>459_bases
GTGGCTTTATCTAAATTAGATAATCTATATCGTGCAGTCATTCTCGACCATTCATCAAATCCGCGTCATGCTGGAGAATT
ACATACAGGTTGTATGATTGATCTTAATAATCCAACTTGTGGAGATGTCATTCGACTGACTGTTGAATTTGAAGGAGATG
TGATTTCAAACATTGCCTTTAGCGGTCATGGTTGCACAATTTCAACAGCTTCAGCCTCAATGATGACAGTGGCAGTTCTT
GGAAAAACCAAAGAAGAAGCCAAAGAGTTGGCAACTATTTTTTCAGCAATGGTAACAGGAGAAACTGACGAACGTCAAGA
AGCACTTGGAGATGCTCAATTTCTTGCGGGTGTCAGTAAATTTCCAGCTCGGGTAAAATGTTCAACCCTAGCTTGGAATG
CTCTAAAAAAAGCCATTGATTTTGGTGAAGCACAAGAAACAGTAATTCATGGTGAATAG

Upstream 100 bases:

>100_bases
ACTAATAATAATTCTGTCAGTACTTATGAATAGATTTCAATTTTTTCAAAAAATAAATCAAAACAATATATAAAAATTAG
AAAAAAGAAAGTGTGAAAGT

Downstream 100 bases:

>100_bases
CTAAAATTTACTGACAGATTTTTTATCAGTAAATTAAAGACTTGTCAGCTAGGCTGAAAAGTCTGTCAATAATAAAATGC
CAAAGAGGAAGAAAAATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MALSKLDNLYRAVILDHSSNPRHAGELHTGCMIDLNNPTCGDVIRLTVEFEGDVISNIAFSGHGCTISTASASMMTVAVL
GKTKEEAKELATIFSAMVTGETDERQEALGDAQFLAGVSKFPARVKCSTLAWNALKKAIDFGEAQETVIHGE

Sequences:

>Translated_152_residues
MALSKLDNLYRAVILDHSSNPRHAGELHTGCMIDLNNPTCGDVIRLTVEFEGDVISNIAFSGHGCTISTASASMMTVAVL
GKTKEEAKELATIFSAMVTGETDERQEALGDAQFLAGVSKFPARVKCSTLAWNALKKAIDFGEAQETVIHGE
>Mature_151_residues
ALSKLDNLYRAVILDHSSNPRHAGELHTGCMIDLNNPTCGDVIRLTVEFEGDVISNIAFSGHGCTISTASASMMTVAVLG
KTKEEAKELATIFSAMVTGETDERQEALGDAQFLAGVSKFPARVKCSTLAWNALKKAIDFGEAQETVIHGE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16258; Mature: 16126

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSKLDNLYRAVILDHSSNPRHAGELHTGCMIDLNNPTCGDVIRLTVEFEGDVISNIAF
CCHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCEEHHEEE
SGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEALGDAQFLAGVSK
CCCCCEEEECCCHHEEHEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FPARVKCSTLAWNALKKAIDFGEAQETVIHGE
CCCEEEHHHHHHHHHHHHHCCCCCCCEEECCC
>Mature Secondary Structure 
ALSKLDNLYRAVILDHSSNPRHAGELHTGCMIDLNNPTCGDVIRLTVEFEGDVISNIAF
CHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCEEHHEEE
SGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEALGDAQFLAGVSK
CCCCCEEEECCCHHEEHEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FPARVKCSTLAWNALKKAIDFGEAQETVIHGE
CCCEEEHHHHHHHHHHHHHCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]