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The map label for this gene is yhfI [H]

Identifier: 125624634

GI number: 125624634

Start: 1825690

End: 1826442

Strand: Reverse

Name: yhfI [H]

Synonym: llmg_1845

Alternate gene names: 125624634

Gene position: 1826442-1825690 (Counterclockwise)

Preceding gene: 125624635

Following gene: 125624633

Centisome position: 72.21

GC content: 38.65

Gene sequence:

>753_bases
ATGAAATTAACAGCGCTAGGTGTTTGGGGAGGGTATCCCACTCGTGATGCAGGAACAACTTCTTATCTTTTACAATCGGA
GTCTGGCTTCAACATGCTTTTAGACTGCGGGTCTCGTGCGGTGACTGAGCTTGAACATGAGTTACAACCGACTCAGTTGG
ATGCGGTTATTTTGAGCCATTATCATGAAGACCATATTGCTGATTTGGGAGCACTTCGTCAATATCGTCAACTTTATCCA
TTAGGACAGGACGGTTGGGACGGTATGATGTTACCGATTTATGGTCATGGCGAAAATGAATATGAATTTTCTAAATTGAA
TTTGGATAAGGTTTCCGAAGGTCATCTTTATGATGTGGAAAATGGGACAAAAGTTGGTCCTTTTGACATTACATTTTTAA
AAACAGTACACCCTGTTGTCAATTATGCTATGCGCATTGTTGAACGTAGAACGGGTCAAGTTTTAGTTTATACTGGGGAT
ACTGGTTATTTTGATGAATTGACAGAATTTGCCAAAGAGGCTGACATTCTTCTTGCCGATGTTTATTTCTTTAAGGACAA
AGCTAAAATGCCTAATCACTTATCATCAATTGAAGCTGGTCAAATTGCTAAAGAAGCGAAAGTTAAAAAATTAATTTTGA
CTCATTTGCCTCAATTTGGTGATTTGGATATTTTACTGACAGAAGCCAAAGAAGCGGCGGGAAATATTGTTACTACTGAT
TTAGCGGTGCCCCATAAAAAATGGCAACTTTAA

Upstream 100 bases:

>100_bases
GTGGATAAGTGCCATTTAGAATAATATAGGACGTCTAGCACTAAGATTAAGGTGCTTTGAACTATAATAGAATTAAGAAA
AAATAGAAAGAGAGAAAAAA

Downstream 100 bases:

>100_bases
CGAGGCGCTTTAAAAAGCCAATAATTATTATTTTGTCTGTCCTTTTATTGACAGTTATTATCATTCTTTCTGTCAGTATC
AGAAATCATTTCCTTAATTA

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKLTALGVWGGYPTRDAGTTSYLLQSESGFNMLLDCGSRAVTELEHELQPTQLDAVILSHYHEDHIADLGALRQYRQLYP
LGQDGWDGMMLPIYGHGENEYEFSKLNLDKVSEGHLYDVENGTKVGPFDITFLKTVHPVVNYAMRIVERRTGQVLVYTGD
TGYFDELTEFAKEADILLADVYFFKDKAKMPNHLSSIEAGQIAKEAKVKKLILTHLPQFGDLDILLTEAKEAAGNIVTTD
LAVPHKKWQL

Sequences:

>Translated_250_residues
MKLTALGVWGGYPTRDAGTTSYLLQSESGFNMLLDCGSRAVTELEHELQPTQLDAVILSHYHEDHIADLGALRQYRQLYP
LGQDGWDGMMLPIYGHGENEYEFSKLNLDKVSEGHLYDVENGTKVGPFDITFLKTVHPVVNYAMRIVERRTGQVLVYTGD
TGYFDELTEFAKEADILLADVYFFKDKAKMPNHLSSIEAGQIAKEAKVKKLILTHLPQFGDLDILLTEAKEAAGNIVTTD
LAVPHKKWQL
>Mature_250_residues
MKLTALGVWGGYPTRDAGTTSYLLQSESGFNMLLDCGSRAVTELEHELQPTQLDAVILSHYHEDHIADLGALRQYRQLYP
LGQDGWDGMMLPIYGHGENEYEFSKLNLDKVSEGHLYDVENGTKVGPFDITFLKTVHPVVNYAMRIVERRTGQVLVYTGD
TGYFDELTEFAKEADILLADVYFFKDKAKMPNHLSSIEAGQIAKEAKVKKLILTHLPQFGDLDILLTEAKEAAGNIVTTD
LAVPHKKWQL

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 28047; Mature: 28047

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTALGVWGGYPTRDAGTTSYLLQSESGFNMLLDCGSRAVTELEHELQPTQLDAVILSH
CEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHH
YHEDHIADLGALRQYRQLYPLGQDGWDGMMLPIYGHGENEYEFSKLNLDKVSEGHLYDVE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEECC
NGTKVGPFDITFLKTVHPVVNYAMRIVERRTGQVLVYTGDTGYFDELTEFAKEADILLAD
CCCEECCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEH
VYFFKDKAKMPNHLSSIEAGQIAKEAKVKKLILTHLPQFGDLDILLTEAKEAAGNIVTTD
HEEHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCEEEEC
LAVPHKKWQL
CCCCCHHCCC
>Mature Secondary Structure
MKLTALGVWGGYPTRDAGTTSYLLQSESGFNMLLDCGSRAVTELEHELQPTQLDAVILSH
CEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHH
YHEDHIADLGALRQYRQLYPLGQDGWDGMMLPIYGHGENEYEFSKLNLDKVSEGHLYDVE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEECC
NGTKVGPFDITFLKTVHPVVNYAMRIVERRTGQVLVYTGDTGYFDELTEFAKEADILLAD
CCCEECCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEH
VYFFKDKAKMPNHLSSIEAGQIAKEAKVKKLILTHLPQFGDLDILLTEAKEAAGNIVTTD
HEEHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCEEEEC
LAVPHKKWQL
CCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]