Click here to switch to the map view.

The map label for this gene is yybT [H]

Identifier: 125624605

GI number: 125624605

Start: 1795794

End: 1797758

Strand: Reverse

Name: yybT [H]

Synonym: llmg_1816

Alternate gene names: 125624605

Gene position: 1797758-1795794 (Counterclockwise)

Preceding gene: 125624606

Following gene: 125624604

Centisome position: 71.07

GC content: 34.96

Gene sequence:

>1965_bases
ATGAATTTTGTCCGTCGGTTTTCACCGCTTGCTATTATTGTCATAATGGTTATTGTTCAAATCATTGAAACCATAGTTGT
CCATGCTTCAGCAACTCGTTGGTCAATCTTGGTTTATTTGTTGATTTTGAATATTGTGATTACGCTCATCTTACTATCTC
AAACCCGAAATTATCAGTTGCGCCGTCAAGATTTTATTCGTAAAATCAATGATGAAGCAGAAAATTCACTTAATGCTACT
TTGGATAATATGCCAATTGGAGTCATTCGTTTCAATAATGAAACCTTCGAGCCTGAATGGTTTAATCCCTTTATTGATAT
GATTTTTAAAGGGAATGACAAAGTAATTAATCGTGATGATATTAAAAAAATATTAAAAAATGCAAGTGATGACCAATATA
TCACTATTGGTAAGCAAAAGTATGTTGCAGAACTTGATTCCGATAAAAACCTTATTTATTTAATTGATGCCACAAAAGAA
GTTGCTTTTAAATCAGAATTTAATGACAGTCGTGCAGTTATTGGTGCGATTTCAGTTGATAATTATGATGATGCAACTGA
TTTGATTACTGATAGTGGTCGAACAGCGATTAATAGTTTTATCGCATCATTTTTAGAAGAATTTGCTGACAAGTATGGAA
TTTATCTCCGTCGAATAAACAGCAGTCGCCATTATTTTTTCTGTGATTATCGTATTCTTGAAAAAATGATTAATGATAAA
TTCGCTGTTCTCAAAGAATTTAGAGAACTTTCAGCTCAAAAAGAAATTCCGTTGACACTTTCTATCGGTGTGGCTTATGG
TTGGAATGATTTTCCTACCATCGGAAAAGTTGCCCTCAATAACCTTGAGTTGGCTCAAGTACGCGGTGGTGACCAGGTTG
TTTTGCGTGAAAATACACCGCAGGCTCGTCCAGTTTATTTTGGGGGAAATTCAGAAAGTAGAACTCAAAAAAGTAGAACA
AGAGCACGGGCTATCTCAACTGCCCTTCGGACAATCATTGCTGAGTCAGAAGACGTTTTTATCGTGGGTCATCGATTTAC
AGATATGGACGCTTTAGGGGCAGCAGTGGCAATGAAGGCTTTTGCTAATATGTCAGGGAAAGAAGCCTTTGTGGTTTATG
ACCCTGAGCAATTATTGCCAGATGTTGAACGTGCAATTAATAAAATGAATGAATCTTCTGATGGATTTACACATATCGTT
CGATTAGAAACCGCTCAAAAGCTTAAGAAAAAAGATTCGTTACTTATTATGGTTGACCACTCTAAAACCAGTCAAACCTT
AAATCTAGATTTTTATAAATCTTTTGAAAAATTAGTGGTGATTGACCACCATAGACGTGATGATGATTTTCCAGAACATG
CCCTACTTTCATATATTGAATCATCAGCAAGTTCTGCCAGTGAATTGACAGTTGAAATTCTGCAATTTCATGATAATAAT
CAAAGAAAAATGTCAACAATTGAAGCAAGTATTGTTCTTGCTGGGATTGAACTGGACACAAAAAACTTTACAAAAGCAAC
AACTGAAAGAACCTTTGAAGCAGCGGCTTATTTACGTTCAAGAGGTTCAGACAATGATCTGATTAAGATGATTATGGCAA
CTGATTTTGAAAAATACAAAAAGACAAATGAAATCGTGCTTAATTCACAAATAATTTTACCTGGCATTGCTCTAGGCATT
GGACTTAAAGAGGAAAAATATGATAATATAGCAACAGCTAAAGCCGCTGACACATTGCTAGACATGGCGGGAATCACCGC
AGCATTTACAATTACTCAACATACAAATGGATATATTTCAATCTCAGCCCGTTCTCGTAATGGATTTAATGTCCAAACAA
TAATGGAACAAATGGGTGGTGGTGGACATTTTAACAATGCCGCGACACAGATTTATGAAAAGAATATTCAGGAAGTACAA
GATGATTTAATTGAAATATTAAAAGAAAGAGAAAATGAAAAATGA

Upstream 100 bases:

>100_bases
ATGTTTAATAAAAAATTATAAGAGAAAAATCACTGACAATCGGTGATTCTTTAAGTTTTTTCTGTCCTATGTTAAAATAG
AGGAATATAGGAGTAATATT

Downstream 100 bases:

>100_bases
AAGTTGTATTCTTAGAAGACGTTAAAGGACAAGGAAAAAAAGGTCAAATTAAAGAAGTGCCGACTGGTTATGCTCAAAAT
TTTTTGATTAAGAAAAATTT

Product: RecJ-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 654; Mature: 654

Protein sequence:

>654_residues
MNFVRRFSPLAIIVIMVIVQIIETIVVHASATRWSILVYLLILNIVITLILLSQTRNYQLRRQDFIRKINDEAENSLNAT
LDNMPIGVIRFNNETFEPEWFNPFIDMIFKGNDKVINRDDIKKILKNASDDQYITIGKQKYVAELDSDKNLIYLIDATKE
VAFKSEFNDSRAVIGAISVDNYDDATDLITDSGRTAINSFIASFLEEFADKYGIYLRRINSSRHYFFCDYRILEKMINDK
FAVLKEFRELSAQKEIPLTLSIGVAYGWNDFPTIGKVALNNLELAQVRGGDQVVLRENTPQARPVYFGGNSESRTQKSRT
RARAISTALRTIIAESEDVFIVGHRFTDMDALGAAVAMKAFANMSGKEAFVVYDPEQLLPDVERAINKMNESSDGFTHIV
RLETAQKLKKKDSLLIMVDHSKTSQTLNLDFYKSFEKLVVIDHHRRDDDFPEHALLSYIESSASSASELTVEILQFHDNN
QRKMSTIEASIVLAGIELDTKNFTKATTERTFEAAAYLRSRGSDNDLIKMIMATDFEKYKKTNEIVLNSQIILPGIALGI
GLKEEKYDNIATAKAADTLLDMAGITAAFTITQHTNGYISISARSRNGFNVQTIMEQMGGGGHFNNAATQIYEKNIQEVQ
DDLIEILKERENEK

Sequences:

>Translated_654_residues
MNFVRRFSPLAIIVIMVIVQIIETIVVHASATRWSILVYLLILNIVITLILLSQTRNYQLRRQDFIRKINDEAENSLNAT
LDNMPIGVIRFNNETFEPEWFNPFIDMIFKGNDKVINRDDIKKILKNASDDQYITIGKQKYVAELDSDKNLIYLIDATKE
VAFKSEFNDSRAVIGAISVDNYDDATDLITDSGRTAINSFIASFLEEFADKYGIYLRRINSSRHYFFCDYRILEKMINDK
FAVLKEFRELSAQKEIPLTLSIGVAYGWNDFPTIGKVALNNLELAQVRGGDQVVLRENTPQARPVYFGGNSESRTQKSRT
RARAISTALRTIIAESEDVFIVGHRFTDMDALGAAVAMKAFANMSGKEAFVVYDPEQLLPDVERAINKMNESSDGFTHIV
RLETAQKLKKKDSLLIMVDHSKTSQTLNLDFYKSFEKLVVIDHHRRDDDFPEHALLSYIESSASSASELTVEILQFHDNN
QRKMSTIEASIVLAGIELDTKNFTKATTERTFEAAAYLRSRGSDNDLIKMIMATDFEKYKKTNEIVLNSQIILPGIALGI
GLKEEKYDNIATAKAADTLLDMAGITAAFTITQHTNGYISISARSRNGFNVQTIMEQMGGGGHFNNAATQIYEKNIQEVQ
DDLIEILKERENEK
>Mature_654_residues
MNFVRRFSPLAIIVIMVIVQIIETIVVHASATRWSILVYLLILNIVITLILLSQTRNYQLRRQDFIRKINDEAENSLNAT
LDNMPIGVIRFNNETFEPEWFNPFIDMIFKGNDKVINRDDIKKILKNASDDQYITIGKQKYVAELDSDKNLIYLIDATKE
VAFKSEFNDSRAVIGAISVDNYDDATDLITDSGRTAINSFIASFLEEFADKYGIYLRRINSSRHYFFCDYRILEKMINDK
FAVLKEFRELSAQKEIPLTLSIGVAYGWNDFPTIGKVALNNLELAQVRGGDQVVLRENTPQARPVYFGGNSESRTQKSRT
RARAISTALRTIIAESEDVFIVGHRFTDMDALGAAVAMKAFANMSGKEAFVVYDPEQLLPDVERAINKMNESSDGFTHIV
RLETAQKLKKKDSLLIMVDHSKTSQTLNLDFYKSFEKLVVIDHHRRDDDFPEHALLSYIESSASSASELTVEILQFHDNN
QRKMSTIEASIVLAGIELDTKNFTKATTERTFEAAAYLRSRGSDNDLIKMIMATDFEKYKKTNEIVLNSQIILPGIALGI
GLKEEKYDNIATAKAADTLLDMAGITAAFTITQHTNGYISISARSRNGFNVQTIMEQMGGGGHFNNAATQIYEKNIQEVQ
DDLIEILKERENEK

Specific function: Unknown

COG id: COG3887

COG function: function code T; Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000160
- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR014528 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 74056; Mature: 74056

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFVRRFSPLAIIVIMVIVQIIETIVVHASATRWSILVYLLILNIVITLILLSQTRNYQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RRQDFIRKINDEAENSLNATLDNMPIGVIRFNNETFEPEWFNPFIDMIFKGNDKVINRDD
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHEECCCCCEECHHH
IKKILKNASDDQYITIGKQKYVAELDSDKNLIYLIDATKEVAFKSEFNDSRAVIGAISVD
HHHHHHCCCCCCEEEECCHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEEEEC
NYDDATDLITDSGRTAINSFIASFLEEFADKYGIYLRRINSSRHYFFCDYRILEKMINDK
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEECHHHHHHHHCCH
FAVLKEFRELSAQKEIPLTLSIGVAYGWNDFPTIGKVALNNLELAQVRGGDQVVLRENTP
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHCCCEEEEECCCCEEEEECCCC
QARPVYFGGNSESRTQKSRTRARAISTALRTIIAESEDVFIVGHRFTDMDALGAAVAMKA
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
FANMSGKEAFVVYDPEQLLPDVERAINKMNESSDGFTHIVRLETAQKLKKKDSLLIMVDH
HHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCEEEEEEC
SKTSQTLNLDFYKSFEKLVVIDHHRRDDDFPEHALLSYIESSASSASELTVEILQFHDNN
CCCCCEEEEHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
QRKMSTIEASIVLAGIELDTKNFTKATTERTFEAAAYLRSRGSDNDLIKMIMATDFEKYK
CHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHH
KTNEIVLNSQIILPGIALGIGLKEEKYDNIATAKAADTLLDMAGITAAFTITQHTNGYIS
CCCCEEEECEEEECHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEE
ISARSRNGFNVQTIMEQMGGGGHFNNAATQIYEKNIQEVQDDLIEILKERENEK
EEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNFVRRFSPLAIIVIMVIVQIIETIVVHASATRWSILVYLLILNIVITLILLSQTRNYQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RRQDFIRKINDEAENSLNATLDNMPIGVIRFNNETFEPEWFNPFIDMIFKGNDKVINRDD
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHEECCCCCEECHHH
IKKILKNASDDQYITIGKQKYVAELDSDKNLIYLIDATKEVAFKSEFNDSRAVIGAISVD
HHHHHHCCCCCCEEEECCHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEEEEC
NYDDATDLITDSGRTAINSFIASFLEEFADKYGIYLRRINSSRHYFFCDYRILEKMINDK
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEECHHHHHHHHCCH
FAVLKEFRELSAQKEIPLTLSIGVAYGWNDFPTIGKVALNNLELAQVRGGDQVVLRENTP
HHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHCCCEEEEECCCCEEEEECCCC
QARPVYFGGNSESRTQKSRTRARAISTALRTIIAESEDVFIVGHRFTDMDALGAAVAMKA
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
FANMSGKEAFVVYDPEQLLPDVERAINKMNESSDGFTHIVRLETAQKLKKKDSLLIMVDH
HHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCEEEEEEC
SKTSQTLNLDFYKSFEKLVVIDHHRRDDDFPEHALLSYIESSASSASELTVEILQFHDNN
CCCCCEEEEHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
QRKMSTIEASIVLAGIELDTKNFTKATTERTFEAAAYLRSRGSDNDLIKMIMATDFEKYK
CHHHHHEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHH
KTNEIVLNSQIILPGIALGIGLKEEKYDNIATAKAADTLLDMAGITAAFTITQHTNGYIS
CCCCEEEECEEEECHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEE
ISARSRNGFNVQTIMEQMGGGGHFNNAATQIYEKNIQEVQDDLIEILKERENEK
EEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]