Click here to switch to the map view.

The map label for this gene is dnaB [H]

Identifier: 125624598

GI number: 125624598

Start: 1789976

End: 1791151

Strand: Reverse

Name: dnaB [H]

Synonym: llmg_1809

Alternate gene names: 125624598

Gene position: 1791151-1789976 (Counterclockwise)

Preceding gene: 125624599

Following gene: 125624597

Centisome position: 70.81

GC content: 36.82

Gene sequence:

>1176_bases
ATGAGAGCAGGAGATTCATTTACAATGCTTAATCGAGGAAAGACCAGCTTTGACGCTGAGACTTTTCGCCTACTCTATTT
ACCAATTATTGGGACGGATGCTTTTGCCCTCTACCAAATGATGTTGAGTTTCTCAACGGGTCGAATTTCTCATTTTTTGG
AGTATCTAAATCTCGGACTTAATCCGTTCATTGAGGCACTTGACAGACTTTCAGCTCTATCATTAGTTCGAGTTTATGAT
GACCATAGTAGCCTTTATTTTGAAGTGAAAAGTCCTCTCAATTTTGAAAATTTTCTTGCTGATGACTTTTATAGACAACT
TTTAATATCAAGAATTGGTGAAAATCGTGTCACAGCTTTAGCTAAAACAATGGAACCCAAAGGGAAAGAAATTTCTAAGA
AGTTCCATGAAGTTTATAAAGTTAATTTTGATAGGGAAGCCACACCAAACCAATCACTAAAAGAGAACCAATTTGATATG
GGGGCATTTAAAAGTCTGATGGAACGCCAAGGTTATCGTTTATCAAATGAGAACCAAGATTCATTAACACTTTATTCCCT
TGCAGAAAAATTTGAACTCAATTGGTACGAATTATTCAAACAGGCTGAACGCACAGCTAATGCCGATAAGAGTTTGAATA
TGAATCATTTAATTCGTAGTCTTTCAGCAACAAGTCAACCACAACCCGCACTTTCAGAATTTCCAAAAGTTTTTGCAGAT
TTGATTGTCGTCAGTAAAGCCCATGAGCCTGATGAATTTATTCGTCAGATAAAAGCCCAAGCTGGAGGTTTTGTCAGCTC
TGATGAGCATAAAATTTTAGCTAATTTGACTCGCCAAAAATTACCAGCAGAAGTTCAAAATATTTTGATTCATTATGTTT
TGGTTCAACAAAAAAATGCTTCACTCAGCCCAAACTTTGTCAATGCTTTGGCGAATGATTGGATGAGAAATAAAGTATTC
ACAGCGGAGGCGGCTGTAAAGCGCATTTTGGAGCGAGAAGAACAAGCAACTGCTAAGGCTAAGACTGAAGTTACCAAGCA
CTCAACGAAAATCAAAAAAGAAGCACCAAAATGGTCAAATCCTGACTATGAAAATAAAACAAGCCAAGAGGAACTTGCTA
AACTTGAAAAAATAAGGCTTGACTCTCTCAAAAAATTGGAAGGGGAGCAAAATTAA

Upstream 100 bases:

>100_bases
AATATTACTAAAAAATAAAGACTGATTTCTTAATGAGCATTAAATCGGTGGATAAAGAACTGTCATTAAAAACAGTCAGT
AAAACTAGAGTGAGGGAAAA

Downstream 100 bases:

>100_bases
TGGAATCTATCGGAGATATTTTAGGAAAGCGACAAGATATTCGAGAAAATTTTGAAAAATTAGTCACAGAAGTTCTAAAA
AATACAGATGTTCAAGCTTT

Product: chromosome replication initiation / membrane attachment protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MRAGDSFTMLNRGKTSFDAETFRLLYLPIIGTDAFALYQMMLSFSTGRISHFLEYLNLGLNPFIEALDRLSALSLVRVYD
DHSSLYFEVKSPLNFENFLADDFYRQLLISRIGENRVTALAKTMEPKGKEISKKFHEVYKVNFDREATPNQSLKENQFDM
GAFKSLMERQGYRLSNENQDSLTLYSLAEKFELNWYELFKQAERTANADKSLNMNHLIRSLSATSQPQPALSEFPKVFAD
LIVVSKAHEPDEFIRQIKAQAGGFVSSDEHKILANLTRQKLPAEVQNILIHYVLVQQKNASLSPNFVNALANDWMRNKVF
TAEAAVKRILEREEQATAKAKTEVTKHSTKIKKEAPKWSNPDYENKTSQEELAKLEKIRLDSLKKLEGEQN

Sequences:

>Translated_391_residues
MRAGDSFTMLNRGKTSFDAETFRLLYLPIIGTDAFALYQMMLSFSTGRISHFLEYLNLGLNPFIEALDRLSALSLVRVYD
DHSSLYFEVKSPLNFENFLADDFYRQLLISRIGENRVTALAKTMEPKGKEISKKFHEVYKVNFDREATPNQSLKENQFDM
GAFKSLMERQGYRLSNENQDSLTLYSLAEKFELNWYELFKQAERTANADKSLNMNHLIRSLSATSQPQPALSEFPKVFAD
LIVVSKAHEPDEFIRQIKAQAGGFVSSDEHKILANLTRQKLPAEVQNILIHYVLVQQKNASLSPNFVNALANDWMRNKVF
TAEAAVKRILEREEQATAKAKTEVTKHSTKIKKEAPKWSNPDYENKTSQEELAKLEKIRLDSLKKLEGEQN
>Mature_391_residues
MRAGDSFTMLNRGKTSFDAETFRLLYLPIIGTDAFALYQMMLSFSTGRISHFLEYLNLGLNPFIEALDRLSALSLVRVYD
DHSSLYFEVKSPLNFENFLADDFYRQLLISRIGENRVTALAKTMEPKGKEISKKFHEVYKVNFDREATPNQSLKENQFDM
GAFKSLMERQGYRLSNENQDSLTLYSLAEKFELNWYELFKQAERTANADKSLNMNHLIRSLSATSQPQPALSEFPKVFAD
LIVVSKAHEPDEFIRQIKAQAGGFVSSDEHKILANLTRQKLPAEVQNILIHYVLVQQKNASLSPNFVNALANDWMRNKVF
TAEAAVKRILEREEQATAKAKTEVTKHSTKIKKEAPKWSNPDYENKTSQEELAKLEKIRLDSLKKLEGEQN

Specific function: Probable component of primosome involved in the initiation of DNA replication. It is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 [H]

COG id: COG3611

COG function: function code L; Replication initiation/membrane attachment protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 44870; Mature: 44870

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGDSFTMLNRGKTSFDAETFRLLYLPIIGTDAFALYQMMLSFSTGRISHFLEYLNLGL
CCCCCCCCHHCCCCCCCCHHHEEEEEEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCH
NPFIEALDRLSALSLVRVYDDHSSLYFEVKSPLNFENFLADDFYRQLLISRIGENRVTAL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
AKTMEPKGKEISKKFHEVYKVNFDREATPNQSLKENQFDMGAFKSLMERQGYRLSNENQD
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCC
SLTLYSLAEKFELNWYELFKQAERTANADKSLNMNHLIRSLSATSQPQPALSEFPKVFAD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LIVVSKAHEPDEFIRQIKAQAGGFVSSDEHKILANLTRQKLPAEVQNILIHYVLVQQKNA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
SLSPNFVNALANDWMRNKVFTAEAAVKRILEREEQATAKAKTEVTKHSTKIKKEAPKWSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDYENKTSQEELAKLEKIRLDSLKKLEGEQN
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRAGDSFTMLNRGKTSFDAETFRLLYLPIIGTDAFALYQMMLSFSTGRISHFLEYLNLGL
CCCCCCCCHHCCCCCCCCHHHEEEEEEEHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCH
NPFIEALDRLSALSLVRVYDDHSSLYFEVKSPLNFENFLADDFYRQLLISRIGENRVTAL
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
AKTMEPKGKEISKKFHEVYKVNFDREATPNQSLKENQFDMGAFKSLMERQGYRLSNENQD
HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCC
SLTLYSLAEKFELNWYELFKQAERTANADKSLNMNHLIRSLSATSQPQPALSEFPKVFAD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
LIVVSKAHEPDEFIRQIKAQAGGFVSSDEHKILANLTRQKLPAEVQNILIHYVLVQQKNA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
SLSPNFVNALANDWMRNKVFTAEAAVKRILEREEQATAKAKTEVTKHSTKIKKEAPKWSN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDYENKTSQEELAKLEKIRLDSLKKLEGEQN
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3027697; 3027671; 8969504; 9387221; 9384377 [H]