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The map label for this gene is rdrA [H]

Identifier: 125624557

GI number: 125624557

Start: 1751946

End: 1752530

Strand: Direct

Name: rdrA [H]

Synonym: llmg_1767

Alternate gene names: 125624557

Gene position: 1751946-1752530 (Clockwise)

Preceding gene: 125624556

Following gene: 125624580

Centisome position: 69.26

GC content: 34.19

Gene sequence:

>585_bases
TTGATTAATAATACAGATGATATCAATTTTCGTTTAGCTAAAAACTATGATTTAAAGCGAAAAATTGCTGTCAAAGCTGC
TGAAAATATTCTTGATGGGGATACAGTAATGATTGAATCTGGTTCTACTTGCGCTTTGCTTGCCGAAGAGTTAGCCTTTA
ATCGAAAAAATATCACTATCATCACTAACTCTGTTTTTATTGCCAATTATATTCGTAAATCCGACTCGGTAAAGGTAATT
TTATTAGGAGGAGAATATCAAAATAATTCACAGGTCAACGTTGGACCTCTGATAAAAAAGGTGGTTGATGAATTTTACGT
TGATAAATTATTTATCGGTATTGATGGTTTTGACCCCGTCCGCGGTTTTAGAAGTAATGATCTCGCTCGTAGTGAAGCCA
TTCATGTCATGGCTGCTGCGGCTAAAGAGGTTGTCATTTTAACTGATGCTTCTAAATTCAACCAAAATGGAACTGTCACC
TGTTTTTCATTCCCTGAAATTTCCCAAGTTTTTACTGACAAGTCAATCAATGCAGAAAGTCAAAAAATTCTCGATTTGAA
AAAAATAAAGGTTACTACTATCTAA

Upstream 100 bases:

>100_bases
TCAACTTTCACAACTCCTTAATGTTTCAAACGTAACGATTCGAAAAGACCTTGATAAACTTGAAGAGAAAGGAATTATTA
ATCGCCAACACGGTTTTGCT

Downstream 100 bases:

>100_bases
TTAAAAATGGACGATGTCCATTTTTTTATTGACAGATTTTCTAAAATATGATATATTTTCTTCATAAGAAATAATTATGC
TTTCGTTTGAAAGTTTTGCT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITIITNSVFIANYIRKSDSVKVI
LLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVT
CFSFPEISQVFTDKSINAESQKILDLKKIKVTTI

Sequences:

>Translated_194_residues
MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITIITNSVFIANYIRKSDSVKVI
LLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVT
CFSFPEISQVFTDKSINAESQKILDLKKIKVTTI
>Mature_194_residues
MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITIITNSVFIANYIRKSDSVKVI
LLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPVRGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVT
CFSFPEISQVFTDKSINAESQKILDLKKIKVTTI

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=194, Percent_Identity=38.1443298969072, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI1789059, Length=186, Percent_Identity=31.7204301075269, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789519, Length=182, Percent_Identity=27.4725274725275, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1788069, Length=177, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789829, Length=181, Percent_Identity=27.0718232044199, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790635, Length=192, Percent_Identity=25.5208333333333, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082344, Length=156, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789170, Length=172, Percent_Identity=23.8372093023256, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI226510968, Length=166, Percent_Identity=23.4939759036145, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 21500; Mature: 21500

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITI
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEE
ITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPV
EECCEEEEHHHCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCC
RGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVTCFSFPEISQVFTDKSINAES
CCCCCCCCHHHHHHHHEEECCCEEEEEECCHHCCCCCCEEEEECCHHHHHHCCCCCCCCH
QKILDLKKIKVTTI
HHHEEEEEEEEEEC
>Mature Secondary Structure
MINNTDDINFRLAKNYDLKRKIAVKAAENILDGDTVMIESGSTCALLAEELAFNRKNITI
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEE
ITNSVFIANYIRKSDSVKVILLGGEYQNNSQVNVGPLIKKVVDEFYVDKLFIGIDGFDPV
EECCEEEEHHHCCCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHEEEEECCCCCCC
RGFRSNDLARSEAIHVMAAAAKEVVILTDASKFNQNGTVTCFSFPEISQVFTDKSINAES
CCCCCCCCHHHHHHHHEEECCCEEEEEECCHHCCCCCCEEEEECCHHHHHHCCCCCCCCH
QKILDLKKIKVTTI
HHHEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]